Factsheet for Os11t0660300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 19685898
nucleus: 23777608
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08930	Sorghum	cytosol	89.78	90.06
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	82.04	89.23
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	88.85	89.13
TraesCS4D01G145700.1	Wheat	cytosol	88.54	88.82
TraesCS4B01G144300.1	Wheat	cytosol	88.24	88.51
HORVU4Hr1G033170.1	Barley	cytosol	87.62	82.75
GSMUA_Achr2P01810_001	Banana	cytosol	77.4	77.88
KRH02663	Soybean	cytosol, nucleus	71.83	72.27
KRH19247	Soybean	cytosol, endoplasmic reticulum	70.59	71.03
Bra011139.1-P	Field mustard	cytosol	69.97	70.41
AT4G29830.1	Thale cress	cytosol	69.97	70.41
CDX68590	Canola	cytosol	69.97	70.41
CDY43529	Canola	cytosol	69.66	70.09
CDY03567	Canola	cytosol	69.04	69.47
CDY14200	Canola	cytosol	68.73	69.16
PGSC0003DMT400041481	Potato	cytosol	63.16	63.16
PGSC0003DMT400000871	Potato	cytosol	62.54	62.54
Solyc12g009030.1.1	Tomato	cytosol, nucleus	62.54	62.54
Solyc07g041080.2.1	Tomato	cytosol, nucleus	62.23	62.23
VIT_13s0084g00760.t01	Wine grape	plastid	18.58	54.55
Os07t0252000-01	Rice	cytosol	17.65	16.15
Os03t0355400-00	Rice	cytosol, nucleus, plastid	21.67	13.36
Os03t0355200-00	Rice	cytosol, nucleus, plastid	21.67	13.36
Os07t0405100-01	Rice	cytosol	21.05	12.25
Os06t0649500-01	Rice	nucleus	23.84	11.77
Os04t0592700-01	Rice	nucleus	22.29	8.08
Os03t0151700-01	Rice	nucleus	20.12	6.91
Os07t0205200-02	Rice	cytosol, nucleus	4.02	5.14

Protein Annotations

MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	EntrezGene:4351059	ProteinID:ABA95198.1	ProteinID:ABG22569.1
InterPro:Apc4_WD40_dom	ProteinID:BAF28766.1	ProteinID:BAT15132.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0010452
GO:GO:0016043	GO:GO:0016441	GO:GO:0016593	GO:GO:0019538	GO:GO:0040029	GO:GO:0051568
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os11g0660300	EnsemblPlants:Os11t0660300-01
PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44090	UniProt:Q2R037	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000681D04	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015617388.1	SEG:seg

Description

WD40 repeat-like domain containing protein. (Os11t0660300-01)

Coordinates

chr11:+:26501646..26504211

Molecular Weight (calculated)

33932.1 Da

IEP (calculated)

6.508

GRAVY (calculated)

0.007

Length

323 amino acids

Sequence
(BLAST)

001: MKLAGLKSVD GAHEESIWAA AWVPAADHRP AALLLTGALD ETVRLWAPDD LASAAASPSR GHALGVVSLA AHPAGAVAAA VSLDSYVRVF DVDSGSSVAT
101: LEAPPSEVWG IQFHPKGSAL AAAGGGSGSV KLWDTEKWKP ITSLAVPRPE GARPDKTGSG KFVLSVAWSP DGKLLACGSM DGTIAVYDAV RMKFLHHLEG
201: HHMPVRSMVF SPVDPHVLFT ASDDCHIHIY DAKEKSLIGA MSGHASWVLS IDVSPDGMAV ATGSSDRTVR LWDINTRASV QTMSNHNDQV WAVAFRPPGG
301: TGVRAGRLAS VSDDKSITLY DYS

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.