Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29830.1 | CDY68484 | AT4G05420.1 | 18223036 |
| AT4G29830.1 | CDY69266 | AT4G05420.1 | 18223036 |
| AT4G29830.1 | CDY69930 | AT4G05420.1 | 18223036 |
| AT4G29830.1 | CDY70585 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14200 | Canola | cytosol | 99.69 | 99.69 |
| CDX68590 | Canola | cytosol | 98.13 | 98.13 |
| CDY43529 | Canola | cytosol | 97.51 | 97.51 |
| AT4G29830.1 | Thale cress | cytosol | 96.88 | 96.88 |
| VIT_11s0016g01730.t01 | Wine grape | cytosol | 81.62 | 81.62 |
| KRH02663 | Soybean | cytosol, nucleus | 79.13 | 79.13 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 77.57 | 77.57 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 77.57 | 77.57 |
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 64.17 | 69.36 |
| Os11t0660300-01 | Rice | cytosol | 69.47 | 69.04 |
| PGSC0003DMT400041481 | Potato | cytosol | 69.16 | 68.73 |
| PGSC0003DMT400000871 | Potato | cytosol | 69.16 | 68.73 |
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 68.85 | 68.42 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 68.54 | 68.32 |
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 68.22 | 67.8 |
| EES08930 | Sorghum | cytosol | 67.91 | 67.7 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 67.91 | 67.7 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 67.91 | 67.7 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 66.36 | 62.28 |
| CDY11502 | Canola | cytosol | 18.69 | 17.34 |
| CDX76728 | Canola | cytosol | 18.38 | 17.05 |
| CDY57442 | Canola | cytosol | 11.21 | 16.36 |
| CDX87098 | Canola | nucleus | 27.41 | 13.17 |
| CDY19814 | Canola | nucleus | 27.1 | 13.02 |
| CDY05473 | Canola | nucleus | 26.48 | 12.76 |
| CDY05378 | Canola | nucleus | 26.17 | 12.65 |
| CDY18648 | Canola | cytosol | 22.43 | 12.59 |
| CDX81324 | Canola | cytosol | 22.74 | 11.89 |
| CDX79933 | Canola | nucleus | 15.89 | 11.89 |
| CDY23845 | Canola | nucleus | 15.89 | 11.86 |
| CDY41854 | Canola | cytosol | 18.07 | 10.66 |
| CDY06918 | Canola | cytosol, nucleus, peroxisome | 15.58 | 10.31 |
| CDY14776 | Canola | mitochondrion | 15.89 | 9.24 |
| CDX77335 | Canola | cytosol | 11.21 | 8.53 |
| CDY16982 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.81 | 7.98 |
| CDX69423 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.5 | 7.95 |
| CDY38089 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.5 | 7.95 |
| CDX85488 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.18 | 7.81 |
| CDY54973 | Canola | nucleus | 21.18 | 7.3 |
| CDY22910 | Canola | nucleus | 21.18 | 7.3 |
| CDY12836 | Canola | extracellular, vacuole | 1.56 | 5.88 |
| CDY57444 | Canola | cytosol, mitochondrion | 4.36 | 4.83 |
| CDY12834 | Canola | endoplasmic reticulum, extracellular | 1.87 | 3.23 |
| CDY72066 | Canola | cytosol | 0.62 | 1.77 |
| CDY43370 | Canola | cytosol | 0.62 | 1.77 |
| CDY40782 | Canola | cytosol | 0.62 | 1.77 |
| CDY27109 | Canola | cytosol | 0.62 | 1.77 |
| CDX92625 | Canola | cytosol | 0.62 | 1.77 |
Protein Annotations
| MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | EnsemblPlants:CDY03567 | ProteinID:CDY03567 |
| ProteinID:CDY03567.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00116296001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12894 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44090 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0004EF24BA | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
BnaC03g68260D
Coordinates
chrLK031944:-:353013..354652
Molecular Weight (calculated)
34254.5 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.092
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP SLLLTGSLDE TVKLWRADEL DLVRTNTGHS LGVAAVAAHP SGIIAASSSL DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPMGTILAVA GGSSASVKLW DTASWRILST LSIPRPEAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVERS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLVGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPMGTILAVA GGSSASVKLW DTASWRILST LSIPRPEAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVERS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLVGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.