CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12834	Canola	endoplasmic reticulum, extracellular	54.12	24.73
CDY57444	Canola	cytosol, mitochondrion	54.12	15.86
CDY18648	Canola	cytosol	75.29	11.19
CDX81324	Canola	cytosol	75.29	10.42
KXG23186	Sorghum	plastid	8.24	2.87
VIT_18s0001g09610.t01	Wine grape	cytosol	5.88	2.28
CDX77335	Canola	cytosol	10.59	2.13
CDY05378	Canola	nucleus	16.47	2.11
CDY19814	Canola	nucleus	16.47	2.1
CDX87098	Canola	nucleus	16.47	2.1
CDY41854	Canola	cytosol	12.94	2.02
CDY05473	Canola	nucleus	15.29	1.95
CDY43370	Canola	cytosol	2.35	1.77
CDX92625	Canola	cytosol	2.35	1.77
CDY72066	Canola	cytosol	2.35	1.77
CDY40782	Canola	cytosol	2.35	1.77
CDY27109	Canola	cytosol	2.35	1.77
CDY14200	Canola	cytosol	5.88	1.56
CDY03567	Canola	cytosol	5.88	1.56
CDY14776	Canola	mitochondrion	9.41	1.45
CDY06918	Canola	cytosol, nucleus, peroxisome	8.24	1.44
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	14.12	1.38
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	14.12	1.37
CDY57442	Canola	cytosol	3.53	1.36
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	12.94	1.27
CDY43529	Canola	cytosol	4.71	1.25
CDX68590	Canola	cytosol	4.71	1.25
CDY22910	Canola	nucleus	12.94	1.18
CDY54973	Canola	nucleus	12.94	1.18
CDX79933	Canola	nucleus	5.88	1.17
CDY23845	Canola	nucleus	5.88	1.16
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	11.76	1.15
CDY11502	Canola	cytosol	2.35	0.58
CDX76728	Canola	cytosol	1.18	0.29

Protein Annotations

EnsemblPlants:CDY12836	EnsemblPlantsGene:GSBRNA2T00070476001	Gene3D:1.20.960.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR22846	PFAM:PF08513	PFscan:PS50896	ProteinID:CDY12836
ProteinID:CDY12836.1	SMART:SM00667	UniParc:UPI0004EF4746	UniProt:A0A078FHZ1	MapMan:35.1	:

Description

BnaC07g15970DBnaC07g15970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHZ1]

Coordinates

chrLK032027:+:561867..562389

Molecular Weight (calculated)

9340.5 Da

IEP (calculated)

7.510

GRAVY (calculated)

0.539

Length

85 amino acids

Sequence
(BLAST)

1: MSSLTSVELN FLIFRYLQES GLTHAAFTLG YEAGINKCKI YGNMVPPGAL VKFVQKGLHY IEMEANLSSV IVTLFSLSLV VPLQS

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.