CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23845	Canola	nucleus	80.0	90.23
Bra016929.1-P	Field mustard	nucleus, plastid	99.79	88.81
CDX79933	Canola	nucleus	78.35	88.58
CDY14776	Canola	mitochondrion	94.85	83.33
AT2G41500.1	Thale cress	nucleus, plastid	87.01	76.17
Solyc04g016510.2.1	Tomato	nucleus	58.76	58.4
GSMUA_Achr11P...	Banana	nucleus	51.96	57.67
KRH31616	Soybean	nucleus	64.33	54.74
KRH72083	Soybean	nucleus	63.51	54.04
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	62.89	52.32
EER94850	Sorghum	plastid	55.88	52.12
Os03t0355400-00	Rice	cytosol, nucleus, plastid	55.67	51.53
Os03t0355200-00	Rice	cytosol, nucleus, plastid	55.67	51.53
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	53.4	51.39
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	53.61	51.08
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	53.2	50.69
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	53.2	50.69
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	53.2	50.29
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	55.67	49.0
VIT_08s0007g05930.t01	Wine grape	nucleus	64.95	47.8
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	17.73	47.78
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.78	47.23
TraesCS2A01G175200.1	Wheat	plastid	52.58	46.11
OQU89577	Sorghum	plastid	18.76	42.72
OQU91217	Sorghum	plastid	21.24	41.87
HORVU2Hr1G032990.1	Barley	cytosol	29.28	36.5
CDY57442	Canola	cytosol	7.42	16.36
CDY43529	Canola	cytosol	10.52	15.89
CDX68590	Canola	cytosol	10.31	15.58
CDY14200	Canola	cytosol	10.31	15.58
CDY03567	Canola	cytosol	10.31	15.58
CDY11502	Canola	cytosol	10.72	15.03
CDX76728	Canola	cytosol	10.31	14.45
CDY18648	Canola	cytosol	15.05	12.76
CDY19814	Canola	nucleus	17.11	12.43
CDX87098	Canola	nucleus	17.11	12.43
CDX81324	Canola	cytosol	15.67	12.38
CDY05378	Canola	nucleus	16.91	12.35
CDY05473	Canola	nucleus	16.7	12.16
CDY12834	Canola	endoplasmic reticulum, extracellular	4.12	10.75
CDY41854	Canola	cytosol	10.72	9.56
CDX77335	Canola	cytosol	8.25	9.48
CDY57444	Canola	cytosol, mitochondrion	4.95	8.28
CDY12836	Canola	extracellular, vacuole	1.44	8.24
CDY22910	Canola	nucleus	15.67	8.16
CDY54973	Canola	nucleus	15.46	8.06
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	13.81	7.72
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	13.81	7.72
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	13.81	7.69
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	13.81	7.64
CDY27109	Canola	cytosol	0.41	1.77
CDX92625	Canola	cytosol	0.41	1.77
CDY40782	Canola	cytosol	0.41	1.77
CDY43370	Canola	cytosol	0.41	1.77
CDY72066	Canola	cytosol	0.41	1.77

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	GO:A0A078F5G2	EnsemblPlants:CDY06918	ProteinID:CDY06918
ProteinID:CDY06918.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00123212001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285	PFAM:PF00400	PFAM:PF08799
PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978
UniParc:UPI0004EE8C17	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaA04g23970D

Coordinates

chrLK031974:+:192395..194868

Molecular Weight (calculated)

53854.5 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.511

Length

485 amino acids

Sequence
(BLAST)

001: MEPNNEDNVS FIPSASPAVP ITQITAAPVP GLSPIPPPSF PPPMAPIPVA RPPTFRPPQN GGAKASDSDS ESDDEHYVIS EESKQVRERQ EKAMQELLIK
101: RRAAAIAVPT NDKSVRDRLR RLGEPITLFG EQEMERRARL AQLMARLDIG GQLDKLLQAY EDDAAPKEEV DEEELQYPFF TEGPKELREA RIEIAKFSIK
201: RAAVRIQRAK RRRDDPDEDV EAETKWALKQ AKGLALDCSN FGDDRPLTGC SFSRDGKILA TCSLSGVTKL WEMPQVTNKI AVLKDHKERA TDVVFSPVDD
301: CLATASADRT AKLWKTDGTL LQTFEASSGL DSLARVWDLR TGRSILVFQG HIKPVLSVTF SPNGYHLASG GEDNQCRIWD LRMRKSLYII PAHANLVSQV
401: KYEPQEGYFL ATASYDMKVN IWSGRDFSLV KSLAGHESKV ASLDITADSS CIATVSHDRT IKLWTSSSNE EEEEDQGGET MDVDL

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.