Factsheet for HORVU2Hr1G032990.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	71.47	54.19
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	68.89	53.17
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.44	50.55
TraesCS2A01G175200.1	Wheat	plastid	70.18	49.37
EER94850	Sorghum	plastid	65.81	49.23
GSMUA_Achr11P...	Banana	nucleus	54.5	48.51
Os03t0355400-00	Rice	cytosol, nucleus, plastid	64.27	47.71
Os03t0355200-00	Rice	cytosol, nucleus, plastid	64.27	47.71
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	66.07	46.64
AT2G05720.1	Thale cress	cytosol	29.82	42.03
Solyc04g016510.2.1	Tomato	nucleus	51.41	40.98
Bra004625.1-P	Field mustard	nucleus	48.33	38.45
KRH31616	Soybean	nucleus	51.93	35.44
Bra016929.1-P	Field mustard	nucleus, plastid	49.36	35.23
KRH72083	Soybean	nucleus	51.41	35.09
AT2G41500.1	Thale cress	nucleus, plastid	49.61	34.84
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	51.67	34.48
CDX79933	Canola	nucleus	35.73	32.4
CDY23845	Canola	nucleus	35.73	32.33
VIT_08s0007g05930.t01	Wine grape	nucleus	51.67	30.5
CDY06918	Canola	cytosol, nucleus, peroxisome	36.5	29.28
CDY14776	Canola	mitochondrion	36.5	25.72
HORVU7Hr1G101230.1	Barley	cytosol	18.25	21.01
HORVU4Hr1G033170.1	Barley	cytosol	15.17	17.25
HORVU0Hr1G022460.1	Barley	nucleus	20.05	15.95
HORVU2Hr1G053480.9	Barley	mitochondrion	19.54	13.57
HORVU7Hr1G113760.2	Barley	nucleus	20.05	11.89
HORVU2Hr1G106110.11	Barley	mitochondrion	16.97	7.49
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	13.62	5.23

Protein Annotations

MapMan:16.4.1.3.2	Gene3D:2.130.10.10	UniProt:A0A287HM14	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU2Hr1G032990	EnsemblPlants:HORVU2Hr1G032990.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846
InterPro:Prp4	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B4666FB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:+:130416743..130417912

Molecular Weight (calculated)

32039.7 Da

IEP (calculated)

7.357

GRAVY (calculated)

-0.199

Length

389 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: GCSFSRDASM LATSSWSGIV KVWSMPQITK IATLKGHTER ATDVAFSPVD NCLATASADR TAKLWNSHGS LLMSFDGHLD RLARLAFHPS GKYLGTASFD
201: KTWRLWDINT GTELLLQEGH SRSVYDLSFH PDGSLAASCG FDATARVWDL RSGRLYCTLI GHVKPVLGVS FSPNGHLVAT ASEDNFCRIW DLRTRQMIYS
301: IPAHKSLISH VKFEPQEGYY LVTSSYDTKA ALWSTRDYRP IKSLSGHESN VSSLDISGDG QQIVTVSHDR TIKIWSCRGS ARDDEMELD

Best Arabidopsis Sequence Match ( AT2G05720.1 )
(BLAST)

001: MGPTELREAR IEITKDFIKR AALRIQRENR RRNDPDEDKN AETKLALKHC KDMVLGSSKF GDDRPLTGCS LSRDGKILVT CSLSGVPKLW EVPQVTNKIV
101: VLKGHKEHVT DVVFSSVDDE CLATASTDRT EKIWKTDGTL LQTFKASSGF DSLARVWDLR TARNILIFQG HIKQVLSVDF SPNGYHLASG GEDNQCRIWD
201: LRMRKLLYII PAHVNLVSQV KYEPQERYFL ATASHDMNVN IWSGRDFSLV KSLVGHESKV ASLDIAVDSS SRKCFA

Arabidopsis Description

Putative U4/U6 small nuclear ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SIB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.