Factsheet for Os03t0355200-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0355400-00	Rice	cytosol, nucleus, plastid	100.0	100.0
EER94850	Sorghum	plastid	89.31	90.0
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	83.78	86.25
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	83.21	85.66
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	83.02	85.46
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	82.06	85.32
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	83.02	84.8
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	88.17	83.85
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.21	80.44
TraesCS2A01G175200.1	Wheat	plastid	83.02	78.66
GSMUA_Achr11P...	Banana	nucleus	61.45	73.68
Solyc04g016510.2.1	Tomato	nucleus	59.92	64.34
HORVU2Hr1G032990.1	Barley	cytosol	47.71	64.27
Bra004625.1-P	Field mustard	nucleus	59.54	63.8
CDX79933	Canola	nucleus	50.19	61.31
CDY23845	Canola	nucleus	50.0	60.93
Bra016929.1-P	Field mustard	nucleus, plastid	60.5	58.17
KRH31616	Soybean	nucleus	62.98	57.89
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	63.17	56.78
KRH72083	Soybean	nucleus	61.64	56.67
AT2G05720.1	Thale cress	cytosol	29.39	55.8
CDY06918	Canola	cytosol, nucleus, peroxisome	51.53	55.67
AT2G41500.1	Thale cress	nucleus, plastid	58.78	55.6
VIT_08s0007g05930.t01	Wine grape	nucleus	63.55	50.53
CDY14776	Canola	mitochondrion	51.53	48.91
Os11t0660300-01	Rice	cytosol	13.36	21.67
Os07t0252000-01	Rice	cytosol	14.5	21.53
Os07t0405100-01	Rice	cytosol	17.94	16.94
Os06t0649500-01	Rice	nucleus	20.42	16.36
Os07t0205200-02	Rice	cytosol, nucleus	4.96	10.28
Os04t0592700-01	Rice	nucleus	16.22	9.54
Os03t0151700-01	Rice	nucleus	13.55	7.55

Protein Annotations

Gene3D:1.10.720.150	EntrezGene:107275966	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EntrezGene:4332861	ProteinID:ABF96003.1
ProteinID:ABF96007.1	ProteinID:BAS84226.1	ProteinID:BAS84228.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285
EnsemblPlantsGene:Os03g0355200	EnsemblPlants:Os03t0355200-00	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like
InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4
UniProt:Q10LA2	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978	UniParc:UPI0000DB406A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015630887.1
RefSeq:XP_015633281.1	SEG:seg	:	:	:	:

Description

OsWD40-72WD40 repeat-like domain containing protein. (Os03t0355200-00)

Coordinates

chr3:+:13570909..13574657

Molecular Weight (calculated)

57547.9 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.432

Length

524 amino acids

Sequence
(BLAST)

001: MENPRPQAPA GTPPMAPLPV PPPIAPIPAP PPRAPAPAPA AAAAVASTSA AGGGGGGGGE ADYEVSDDHR AARERHERAV QELLQRRRAF AMAVPTNDSA
101: VRARLRRLGE PVTLFGEREM ERRDRLRALM VRLEADGHLD RLLRAQEEEQ GAAGAEEEEE QIQYPFFTEG TQELLKARVD IAQYSLPRAK ARIERAKRCH
201: DDPDEDPEAE ANLVVKQAED FVLECSEIGD DRPLTGCSFS RDFSMLATSS WSGMIKVWSM PQVTKIATLK GHTERATDVA FSPVDDCLAT ASADKTAKLW
301: KTDGSLLLSF DGHLDRLARL AFHPSGGYLA TASFDKTWRL WDVSTGKELL LQEGHSRSVY GVSFHPDGSL AASCGLDAYA RVWDLRSGRL WGTLMGHVKP
401: VLGVSFSPNG YLVATGSEDN FCRIWDLRTK RMLYSIPAHK SLISHVKFEP QEGYYLATSS YDTKAALWSA RDYKPIKSLV AHESKVTSLD ISGDGQQIVT
501: VSHDRTIKIW SCRSRAQDNA MELD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.