Factsheet for TraesCS2A01G175200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	89.69	96.69
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	91.14	92.99
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	84.81	92.14
EER94850	Sorghum	plastid	78.84	83.85
Os03t0355200-00	Rice	cytosol, nucleus, plastid	78.66	83.02
Os03t0355400-00	Rice	cytosol, nucleus, plastid	78.66	83.02
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	79.2	79.49
GSMUA_Achr11P...	Banana	nucleus	56.06	70.94
HORVU2Hr1G032990.1	Barley	cytosol	49.37	70.18
Solyc04g016510.2.1	Tomato	nucleus	55.33	62.7
Bra004625.1-P	Field mustard	nucleus	53.71	60.74
CDX79933	Canola	nucleus	44.67	57.58
CDY23845	Canola	nucleus	44.67	57.44
Bra016929.1-P	Field mustard	nucleus, plastid	55.33	56.15
KRH31616	Soybean	nucleus	57.5	55.79
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	58.77	55.75
KRH72083	Soybean	nucleus	56.6	54.91
AT2G41500.1	Thale cress	nucleus, plastid	54.43	54.33
AT2G05720.1	Thale cress	cytosol	26.4	52.9
CDY06918	Canola	cytosol, nucleus, peroxisome	46.11	52.58
VIT_08s0007g05930.t01	Wine grape	nucleus	59.13	49.62
CDY14776	Canola	mitochondrion	46.47	46.56
TraesCS7A01G446500.1	Wheat	cytosol	13.38	21.14
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	11.93	20.5
TraesCS7A01G446400.2	Wheat	cytosol	12.66	20.17
TraesCS2A01G227200.3	Wheat	cytosol	16.09	15.92
TraesCS5A01G317800.1	Wheat	nucleus	18.63	15.7
TraesCS7A01G508300.2	Wheat	nucleus	18.44	15.55
TraesCS2A01G447700.1	Wheat	mitochondrion	15.73	9.83
TraesCS7A01G467500.1	Wheat	nucleus	4.16	9.54
TraesCS4A01G370000.1	Wheat	nucleus	14.1	8.3

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285
PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320	SMART:SM00500
SUPFAM:SSF158230	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS2A01G175200	EnsemblPlants:TraesCS2A01G175200.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:133684370..133686635

Molecular Weight (calculated)

60770.7 Da

IEP (calculated)

6.335

GRAVY (calculated)

-0.382

Length

553 amino acids

Sequence
(BLAST)

001: MPPSTSTYPQ IAATTTAAAA SQLKTLVFVP KPRLASMENP RPLPPAITPP MAPLPVHPPI APVPVPVPPR APASTSAAAG GGDDDEVGYE VSDDHRAARE
101: RHERAVQELL QRRRAYAMAV PTNDSAVRAR LRRLGEPVTL FGEGAMERRD RLRALMARLE AEGQFDRLLR AQEDEQVVPG DDDNDEGAEQ IKYPFFTEGT
201: NQLLQARVDI AMYSLPRAKA RVERAKRRLA DPDEDPEAEA ALVVKQAADF ALERSEIGDD RPLTGCSFSR DASMLATSSW SGIVKVWSLP QITRIATLKG
301: HTERATDVAF SPVDNCLATA SADKTAKLWN SDGSLLMSFD GHLDRLARLA FHPSGKYLGT ASFDKTWRLW DINTGTELLL QEGHSRSVYG VSFHSDGSLA
401: ASCGFDASAR VWDLRSGRLY CTLIGHVKPV LGVTFSPNGH LVATASEDNF CRIWDLRTRQ MLYSIPAHKS LISHVKFEPQ EGYYLATSSY DTKAALWSTW
501: DYKPIKSLSG HESNVTSLDI SGDGQQIVTV SLDRTIKIWS CRGSARDNEM ELD

Best Arabidopsis Sequence Match ( AT2G05720.1 )
(BLAST)

001: MGPTELREAR IEITKDFIKR AALRIQRENR RRNDPDEDKN AETKLALKHC KDMVLGSSKF GDDRPLTGCS LSRDGKILVT CSLSGVPKLW EVPQVTNKIV
101: VLKGHKEHVT DVVFSSVDDE CLATASTDRT EKIWKTDGTL LQTFKASSGF DSLARVWDLR TARNILIFQG HIKQVLSVDF SPNGYHLASG GEDNQCRIWD
201: LRMRKLLYII PAHVNLVSQV KYEPQERYFL ATASHDMNVN IWSGRDFSLV KSLVGHESKV ASLDIAVDSS SRKCFA

Arabidopsis Description

Putative U4/U6 small nuclear ribonucleoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SIB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.