Factsheet for TraesCS4A01G165700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29830.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT4G29830.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT4G29830.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT4G29830.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT4G29830.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G145700.1	Wheat	cytosol	99.07	99.07
TraesCS4B01G144300.1	Wheat	cytosol	98.76	98.76
HORVU4Hr1G033170.1	Barley	cytosol	96.89	91.23
Os11t0660300-01	Rice	cytosol	89.13	88.85
EES08930	Sorghum	cytosol	88.82	88.82
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	80.75	87.54
GSMUA_Achr2P01810_001	Banana	cytosol	74.84	75.08
KRH02663	Soybean	cytosol, nucleus	70.5	70.72
AT4G29830.1	Thale cress	cytosol	69.25	69.47
KRH19247	Soybean	cytosol, endoplasmic reticulum	69.25	69.47
Bra011139.1-P	Field mustard	cytosol	68.63	68.85
CDX68590	Canola	cytosol	68.63	68.85
CDY43529	Canola	cytosol	68.32	68.54
CDY03567	Canola	cytosol	67.7	67.91
CDY14200	Canola	cytosol	67.39	67.6
PGSC0003DMT400041481	Potato	cytosol	61.8	61.61
Solyc07g041080.2.1	Tomato	cytosol, nucleus	60.87	60.68
PGSC0003DMT400000871	Potato	cytosol	59.94	59.75
Solyc12g009030.1.1	Tomato	cytosol, nucleus	59.94	59.75
VIT_13s0084g00760.t01	Wine grape	plastid	18.63	54.55
TraesCS7A01G446500.1	Wheat	cytosol	18.01	16.57
TraesCS7A01G446400.2	Wheat	cytosol	16.15	14.99
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	21.12	13.36
TraesCS2A01G227200.3	Wheat	cytosol	21.43	12.34
TraesCS5A01G317800.1	Wheat	nucleus	24.53	12.04
TraesCS7A01G508300.2	Wheat	nucleus	24.53	12.04
TraesCS2A01G175200.1	Wheat	plastid	20.5	11.93
TraesCS2A01G447700.1	Wheat	mitochondrion	20.81	7.57
TraesCS4A01G370000.1	Wheat	nucleus	20.19	6.91
TraesCS7A01G467500.1	Wheat	nucleus	4.35	5.81

Protein Annotations

MapMan:15.3.6.1.6	MapMan:16.8.1.2.6.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4A01G165700	EnsemblPlants:TraesCS4A01G165700.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:396752253..396754826

Molecular Weight (calculated)

33595.7 Da

IEP (calculated)

6.222

GRAVY (calculated)

0.029

Length

322 amino acids

Sequence
(BLAST)

001: MKLAGLKSVD GAHEDSIWAA AWVPAADHRP TALLLTGSID ETVRAWQPDD LAAASPPAGG HALGVISLAA HPAGVIAAAV SIDSHVRVFD VDSGASVATL
101: DAAPSEVWGV QFHPKGVALA AAGGGSGSVK LWDTEKWQPI ASLPVPRPEG ARADKTGSGK FVLSVAWSPD GKLLACGSMD GTIAVYDAVR MKFLHHLEGH
201: HMPVRSMVFS PVDPHVLLTG CDDSHIHIYD AKEKGLIGAM SGHASWVLSI DVSPDGMAVA TGSSDRTVRL WDINARASVQ TMSNHSDQVW AVAFRPPGGE
301: GVRAGRLASA SDDKSISLYD YS

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.