Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0205200-02 | Rice | cytosol, nucleus | 65.56 | 62.45 |
| TraesCS5A01G317800.1 | Wheat | nucleus | 81.74 | 30.03 |
| TraesCS7A01G508300.2 | Wheat | nucleus | 80.91 | 29.73 |
| VIT_04s0008g05780.t01 | Wine grape | nucleus | 60.58 | 21.6 |
| AT5G25150.1 | Thale cress | nucleus | 57.68 | 20.78 |
| Bra036534.1-P | Field mustard | nucleus | 56.85 | 20.51 |
| CDY19814 | Canola | nucleus | 56.85 | 20.51 |
| CDX87098 | Canola | nucleus | 56.43 | 20.36 |
| Bra020485.1-P | Field mustard | nucleus | 54.77 | 19.82 |
| CDY05473 | Canola | nucleus | 54.77 | 19.82 |
| CDY05378 | Canola | nucleus | 53.94 | 19.58 |
| TraesCS4A01G149100.1 | Wheat | cytosol, nucleus, plastid | 10.37 | 4.91 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 5.81 | 4.35 |
| TraesCS2A01G175200.1 | Wheat | plastid | 9.54 | 4.16 |
| TraesCS2A01G447700.1 | Wheat | mitochondrion | 12.45 | 3.39 |
| TraesCS2A01G227200.3 | Wheat | cytosol | 6.64 | 2.86 |
| TraesCS4A01G370000.1 | Wheat | nucleus | 8.71 | 2.23 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 2.9 | 2.0 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 2.49 | 1.73 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G467500.1 | EnsemblPlantsGene:TraesCS7A01G467500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | PANTHER:PTHR19879 | PANTHER:PTHR19879:SF1 | PFscan:PS50082 | ScanProsite:PS00678 |
| SEG:seg | MapMan:15.3.4.3.1 | MapMan:15.3.5.3.5 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:663806495..663809007
Molecular Weight (calculated)
25967.9 Da
IEP (calculated)
5.394
GRAVY (calculated)
-0.301
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGIINERII FEGTVPGLLT LYHTFYLPSL PKSFPSTFLY AILAVSAGQP SLISDDADAV ALVGTSKDLA KQINQKEVHW GLLEDSVEER MEKALSDSDK
101: TEADSKDADA EDNNKKKSSE GGKQGGSLTK KLKKDKLVGA TGKNTKSETS MISAAPRVKP ELTLPAMPVE VEQSMLDDLR NRVQLNNLAL PSVSFYTFLN
201: THNGLNCSSI SNDGSLVVGG FSDSSVKVWD MAKIGQPAKT C
101: TEADSKDADA EDNNKKKSSE GGKQGGSLTK KLKKDKLVGA TGKNTKSETS MISAAPRVKP ELTLPAMPVE VEQSMLDDLR NRVQLNNLAL PSVSFYTFLN
201: THNGLNCSSI SNDGSLVVGG FSDSSVKVWD MAKIGQPAKT C
001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
Arabidopsis Description
TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.