Factsheet for TraesCS3B01G445300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G371300.1
TraesCS3B01G403500.1
TraesCS3D01G364400.1
TraesCS5B01G318400.1
TraesCS5D01G324200.2
TraesCS7A01G467500.1
TraesCS7B01G416400.1
TraesCS7D01G496500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	TraesCS3A01G371300.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3B01G403500.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS3D01G364400.1	AT3G10070.1	17340043
AT1G54140.1	TraesCS5B01G318400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS5D01G324200.2	AT5G25150.1	17340043
AT1G54140.1	TraesCS7A01G467500.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7B01G416400.1	AT5G25150.1	17340043
AT1G54140.1	TraesCS7D01G496500.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G386800.1	Wheat	cytosol	91.67	88.71
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	96.67	80.93
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	94.44	77.27
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	93.33	76.71
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	93.89	74.78
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	90.0	72.32
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	71.67	71.27
GSMUA_Achr7P11400_001	Banana	cytosol	62.78	71.07
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	62.22	69.57
EER94702	Sorghum	cytosol, nucleus, plastid	80.56	63.6
Zm00001d029473_P001	Maize	plastid	79.44	63.56
Solyc04g010090.2.1	Tomato	nucleus	55.56	62.11
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	77.22	62.05
Zm00001d047265_P001	Maize	plastid	79.44	57.2
VIT_09s0002g01160.t01	Wine grape	cytosol	55.0	55.93
Bra030901.1-P	Field mustard	nucleus	53.89	54.19
CDY56625	Canola	nucleus	53.89	54.19
CDY02479	Canola	nucleus	53.89	54.19
PGSC0003DMT400029923	Potato	nucleus	55.0	54.1
AT1G54140.1	Thale cress	nucleus	53.33	52.46
KRH02410	Soybean	cytosol	51.11	51.98
KRH50675	Soybean	cytosol	50.0	51.72
CDY26139	Canola	cytosol, nucleus, plastid	44.44	51.28
CDY33086	Canola	plastid	32.22	50.0
KRH73515	Soybean	cytosol	47.78	47.78
GSMUA_Achr10P...	Banana	cytosol	57.78	26.2

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6
SUPFAM:SSF47113	InterPro:TFIID-31	EnsemblPlantsGene:TraesCS3B01G445300	EnsemblPlants:TraesCS3B01G445300.1	TIGR:cd07979	SEG:seg

Description

No Description!

Coordinates

chr3B:-:685061745..685064413

Molecular Weight (calculated)

19647.0 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.607

Length

180 amino acids

Sequence
(BLAST)

001: MGLGEGEYEP RVVHQFLDLA YRYVGDVLGD AQVYADHAAK PQLDADDVRL AIQAKVNFSF SQPPPREVLL ELARSRNKIP LPKSIAPPGS IPLPPEQDTL
101: LSENYQLLPA LKPPTQTEEA EDDNEGAGAS PTNPNPNYPQ DQRGSEQHQP QSQRVSFQLN AVAAAAAKRS LVTIDQLNMG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.