Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023148 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54140.1 | PGSC0003DMT400023148 | AT3G10070.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g010090.2.1 | Tomato | nucleus | 77.6 | 88.2 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 77.6 | 80.23 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 63.93 | 75.0 |
| Bra030901.1-P | Field mustard | nucleus | 73.22 | 74.86 |
| CDY02479 | Canola | nucleus | 73.22 | 74.86 |
| CDY56625 | Canola | nucleus | 72.68 | 74.3 |
| AT1G54140.1 | Thale cress | nucleus | 73.22 | 73.22 |
| KRH50675 | Soybean | cytosol | 67.21 | 70.69 |
| KRH02410 | Soybean | cytosol | 67.21 | 69.49 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 59.56 | 68.55 |
| KRH73515 | Soybean | cytosol | 62.84 | 63.89 |
| TraesCS3B01G421800.1 | Wheat | cytosol, nucleus, plastid | 48.63 | 55.28 |
| TraesCS3B01G445300.1 | Wheat | nucleus | 54.1 | 55.0 |
| TraesCS3A01G387000.1 | Wheat | nucleus | 54.64 | 54.95 |
| TraesCS3A01G386900.1 | Wheat | nucleus | 43.17 | 54.86 |
| CDY33086 | Canola | plastid | 33.33 | 52.59 |
| TraesCS3D01G382100.1 | Wheat | cytosol, nucleus, plastid | 60.66 | 50.68 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 51.37 | 50.54 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 56.28 | 50.49 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 60.11 | 50.0 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 60.11 | 50.0 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 61.2 | 50.0 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 56.83 | 49.52 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 59.02 | 49.32 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 57.92 | 49.3 |
| HORVU3Hr1G081440.3 | Barley | cytosol | 30.6 | 49.12 |
| TraesCS3B01G516000.1 | Wheat | cytosol, nucleus, plastid | 60.11 | 49.11 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 60.11 | 48.89 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 60.11 | 48.67 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 59.56 | 48.66 |
| TraesCS3B01G421900.1 | Wheat | cytosol, nucleus, plastid | 47.54 | 48.07 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 59.56 | 47.81 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 30.6 | 47.46 |
| Zm00001d029473_P001 | Maize | plastid | 57.92 | 47.11 |
| HORVU3Hr1G091670.2 | Barley | cytosol, mitochondrion, nucleus | 27.87 | 45.95 |
| Zm00001d047265_P001 | Maize | plastid | 59.02 | 43.2 |
| Zm00001d007933_P001 | Maize | plastid | 38.25 | 41.42 |
| HORVU2Hr1G031760.1 | Barley | cytosol, nucleus | 20.77 | 39.58 |
| GSMUA_Achr10P... | Banana | cytosol | 51.91 | 23.93 |
| HORVU3Hr1G081540.4 | Barley | plastid | 31.69 | 23.87 |
| Zm00001d008371_P001 | Maize | cytosol | 31.69 | 23.2 |
| Os07t0612500-00 | Rice | nucleus | 31.15 | 13.41 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | ProteinID:ABA81859 | ProteinID:ABA81859.1 | EMBL:DQ207851 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| UniProt:M1ATJ3 | PFAM:PF02291 | EnsemblPlantsGene:PGSC0003DMG400011493 | PGSC:PGSC0003DMG400011493 | EnsemblPlants:PGSC0003DMT400029923 | PANTHER:PTHR12595 |
| PANTHER:PTHR12595:SF6 | SUPFAM:SSF47113 | InterPro:TFIID-31 | UniParc:UPI000295CAF1 | SEG:seg | : |
Description
TAFII21 [Source:PGSC_GENE;Acc:PGSC0003DMG400011493]
Coordinates
chr4:+:6365291..6370762
Molecular Weight (calculated)
20329.9 Da
IEP (calculated)
4.703
GRAVY (calculated)
-0.720
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGGEEDLP RDAKIVKTLL KSMGVDDYEP RVVQQFLELW YRYVVDVLTD AQVYSEHAGK ASIDSDDIKL AIQSKVNFSF SQPPPREVLL ELARNRNKIP
101: LPKSIAGSGV PLPPEQDTLI NPNYQLAIAK KQTSQPEETE EDEESADPNP APSKNPSLSH EKTDVPQGTP QRVSFPLGAK RPR
101: LPKSIAGSGV PLPPEQDTLI NPNYQLAIAK KQTSQPEETE EDEESADPNP APSKNPSLSH EKTDVPQGTP QRVSFPLGAK RPR
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.