CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH15679
KRH30849
KRH32724
KRH52333
KRH61671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	KRH30849	AT3G10070.1	17340043
AT1G54140.1	KRH32724	AT3G10070.1	17340043
AT1G54140.1	KRG99418	AT5G25150.1	17340043
AT1G54140.1	KRH05348	AT5G25150.1	17340043
AT1G54140.1	KRH15679	AT5G25150.1	17340043
AT1G54140.1	KRH52333	AT5G25150.1	17340043
AT1G54140.1	KRH61671	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50675	Soybean	cytosol	82.78	85.63
KRH02410	Soybean	cytosol	81.11	82.49
VIT_09s0002g01160.t01	Wine grape	cytosol	65.0	66.1
CDY26139	Canola	cytosol, nucleus, plastid	56.67	65.38
Bra030901.1-P	Field mustard	nucleus	65.0	65.36
CDY02479	Canola	nucleus	65.0	65.36
CDY56625	Canola	nucleus	63.33	63.69
Solyc04g010090.2.1	Tomato	nucleus	56.67	63.35
PGSC0003DMT400029923	Potato	nucleus	63.89	62.84
AT1G54140.1	Thale cress	nucleus	63.89	62.84
GSMUA_Achr7P11400_001	Banana	cytosol	54.44	61.64
HORVU3Hr1G081440.3	Barley	cytosol	31.67	50.0
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	43.33	48.45
TraesCS3A01G387000.1	Wheat	nucleus	48.89	48.35
TraesCS3B01G445300.1	Wheat	nucleus	47.78	47.78
CDY33086	Canola	plastid	30.0	46.55
TraesCS3A01G386800.1	Wheat	cytosol	46.11	44.62
TraesCS3A01G386900.1	Wheat	nucleus	35.56	44.44
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	53.89	44.29
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	55.0	44.2
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	27.22	44.14
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	52.78	43.38
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	52.78	43.18
TraesCS3D01G382200.1	Wheat	nucleus	48.89	43.14
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	52.22	42.73
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	52.78	42.04
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	52.22	41.96
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	52.22	41.96
HORVU3Hr1G100530.1	Barley	cytosol	48.89	41.9
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	50.0	41.86
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	52.22	41.78
EER94702	Sorghum	cytosol, nucleus, plastid	52.78	41.67
Zm00001d029473_P001	Maize	plastid	51.67	41.33
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	40.56	40.33
TraesCS3A01G387200.1	Wheat	nucleus	24.44	37.29
Zm00001d047265_P001	Maize	plastid	51.67	37.2
Zm00001d007933_P001	Maize	plastid	32.78	34.91
HORVU2Hr1G031760.1	Barley	cytosol, nucleus	18.33	34.38
GSMUA_Achr10P...	Banana	cytosol	50.0	22.67
Zm00001d008371_P001	Maize	cytosol	27.22	19.6
HORVU3Hr1G081540.4	Barley	plastid	25.56	18.93
Os07t0612500-00	Rice	nucleus	32.78	13.88

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100816922	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	EMBL:ACUP02001280	EnsemblPlantsGene:GLYMA_02G277500
GO:GO:0000124	GO:GO:0001075	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0006366	GO:GO:0006464	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0043966	GO:GO:0044212
GO:GO:0045944	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	UniProt:I1JIU9	InterPro:IPR009072
EnsemblPlants:KRH73515	ProteinID:KRH73515	ProteinID:KRH73515.1	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6
SUPFAM:SSF47113	InterPro:TFIID-31	UniParc:UPI0001CA91F0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:46027755..46029924

Molecular Weight (calculated)

20636.5 Da

IEP (calculated)

4.355

GRAVY (calculated)

-0.675

Length

180 amino acids

Sequence
(BLAST)

001: MADKDEELAM PRDAKIVKSL MKSMGVEDYE PRVVHKFLDL WYRYIVDVLT DAQVYSEHAD KSEIDCDDIK LAIQSKLNFS FSQPPPREVL LELAHNRNKI
101: PLPKTIAGPV IPLPPDQDTL ISPNYMFAIP NQRPAEPPIE ETEDEEDTNT IPNPSQEEQI VMQQNSPQRV SFPLPKRQND

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.