Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02479 | Canola | nucleus | 90.16 | 92.18 |
| Bra030901.1-P | Field mustard | nucleus | 90.16 | 92.18 |
| CDY56625 | Canola | nucleus | 88.52 | 90.5 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 72.13 | 84.62 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 76.5 | 79.1 |
| PGSC0003DMT400029923 | Potato | nucleus | 73.22 | 73.22 |
| KRH50675 | Soybean | cytosol | 69.4 | 72.99 |
| KRH02410 | Soybean | cytosol | 70.49 | 72.88 |
| Solyc04g010090.2.1 | Tomato | nucleus | 62.3 | 70.81 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 56.83 | 65.41 |
| KRH73515 | Soybean | cytosol | 62.84 | 63.89 |
| TraesCS3B01G421800.1 | Wheat | cytosol, nucleus, plastid | 49.18 | 55.9 |
| TraesCS3A01G387000.1 | Wheat | nucleus | 53.55 | 53.85 |
| TraesCS3B01G445300.1 | Wheat | nucleus | 52.46 | 53.33 |
| TraesCS3A01G386900.1 | Wheat | nucleus | 40.98 | 52.08 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 61.2 | 51.14 |
| TraesCS3D01G382100.1 | Wheat | cytosol, nucleus, plastid | 60.66 | 50.68 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 51.37 | 50.54 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 60.66 | 50.45 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 55.74 | 50.0 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 59.56 | 49.55 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 56.83 | 48.37 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 59.02 | 48.21 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 59.02 | 47.79 |
| TraesCS3B01G421900.1 | Wheat | cytosol, nucleus, plastid | 46.99 | 47.51 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 30.6 | 47.46 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 59.02 | 47.37 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 57.92 | 47.32 |
| TraesCS3B01G516000.1 | Wheat | cytosol, nucleus, plastid | 57.38 | 46.88 |
| HORVU3Hr1G091670.2 | Barley | cytosol, mitochondrion, nucleus | 28.42 | 46.85 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 57.38 | 46.67 |
| Zm00001d029473_P001 | Maize | plastid | 57.38 | 46.67 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 53.55 | 46.67 |
| HORVU3Hr1G081440.3 | Barley | cytosol | 28.96 | 46.49 |
| Zm00001d047265_P001 | Maize | plastid | 57.92 | 42.4 |
| Zm00001d007933_P001 | Maize | plastid | 36.07 | 39.05 |
| HORVU2Hr1G031760.1 | Barley | cytosol, nucleus | 19.13 | 36.46 |
| HORVU3Hr1G081540.4 | Barley | plastid | 32.24 | 24.28 |
| GSMUA_Achr10P... | Banana | cytosol | 52.46 | 24.18 |
| Zm00001d008371_P001 | Maize | cytosol | 29.51 | 21.6 |
| Os07t0612500-00 | Rice | nucleus | 30.6 | 13.18 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | EntrezGene:841854 | UniProt:A0A178W640 | ProteinID:AAD25788.1 |
| ProteinID:AEE33054.1 | EMBL:AF238327 | ArrayExpress:AT1G54140 | EnsemblPlantsGene:AT1G54140 | RefSeq:AT1G54140 | TAIR:AT1G54140 |
| RefSeq:AT1G54140-TAIR-G | EnsemblPlants:AT1G54140.1 | TAIR:AT1G54140.1 | EMBL:AY087886 | EMBL:AY463624 | EMBL:BT025537 |
| GO:GO:0000124 | GO:GO:0001075 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0003824 | GO:GO:0004402 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006352 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0006464 | GO:GO:0008134 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043966 | GO:GO:0044212 | GO:GO:0045944 | GO:GO:0046982 | GO:GO:0051123 | InterPro:Histone-fold |
| InterPro:IPR009072 | RefSeq:NP_175816.1 | ProteinID:OAP13959.1 | PFAM:PF02291 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12595 |
| PANTHER:PTHR12595:SF6 | UniProt:Q9SYH2 | SUPFAM:SSF47113 | Symbol:TAFII21 | InterPro:TFIID-31 | UniParc:UPI00000AB1A3 |
| SEG:seg | : | : | : | : | : |
Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
Coordinates
chr1:-:20213899..20215265
Molecular Weight (calculated)
20598.2 Da
IEP (calculated)
4.401
GRAVY (calculated)
-0.742
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.