Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 93.15 | 92.73 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 92.69 | 92.69 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 89.04 | 90.7 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 84.02 | 90.2 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 86.3 | 84.38 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 81.28 | 78.07 |
| Zm00001d029473_P001 | Maize | plastid | 79.45 | 77.33 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 75.8 | 74.11 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 52.97 | 72.96 |
| Zm00001d047265_P001 | Maize | plastid | 79.91 | 70.0 |
| Solyc04g010090.2.1 | Tomato | nucleus | 46.12 | 62.73 |
| Bra030901.1-P | Field mustard | nucleus | 50.68 | 62.01 |
| CDY02479 | Canola | nucleus | 50.68 | 62.01 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 49.77 | 61.58 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 43.38 | 60.9 |
| CDY56625 | Canola | nucleus | 49.77 | 60.89 |
| PGSC0003DMT400029923 | Potato | nucleus | 50.68 | 60.66 |
| AT1G54140.1 | Thale cress | nucleus | 50.68 | 60.66 |
| KRH02410 | Soybean | cytosol | 47.03 | 58.19 |
| KRH50675 | Soybean | cytosol | 46.12 | 58.05 |
| KRH73515 | Soybean | cytosol | 44.29 | 53.89 |
| CDY33086 | Canola | plastid | 27.85 | 52.59 |
| GSMUA_Achr10P... | Banana | cytosol | 48.4 | 26.7 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF02291 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 |
| SUPFAM:SSF47113 | InterPro:TFIID-31 | EnsemblPlantsGene:TraesCS3D01G382100 | EnsemblPlants:TraesCS3D01G382100.1 | TIGR:cd07979 | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:497869915..497872438
Molecular Weight (calculated)
23630.7 Da
IEP (calculated)
4.688
GRAVY (calculated)
-0.586
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGVRPSL PSAAAARGAS GPDEPRDARV VRELLRSMGL GEGEYEPRVV HQFLDLAYRY VGDVLGDAQV YADHAAKPQL DADDVRLAIQ AKVNFSFSQP
101: PPREVLLELA RSRNKIPLPK SIAPPGSIPL PPEQDTLLSE NYQLLPALKP PTQIEEAEDD NEGTNASPGN PSPSYPQDQR GSEQHQPQSQ SQRVSFQLNA
201: VAAAAAKRPL VTIDQLNMG
101: PPREVLLELA RSRNKIPLPK SIAPPGSIPL PPEQDTLLSE NYQLLPALKP PTQIEEAEDD NEGTNASPGN PSPSYPQDQR GSEQHQPQSQ SQRVSFQLNA
201: VAAAAAKRPL VTIDQLNMG
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.