Factsheet for Zm00001d029473_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016330_P001
Zm00001d025112_P001
Zm00001d042792_P002
Zm00001d044810_P001
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT1G54140.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT1G54140.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94702	Sorghum	cytosol, nucleus, plastid	96.44	95.18
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	60.0	83.85
Zm00001d047265_P001	Maize	plastid	88.89	80.0
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	78.22	80.0
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	77.33	79.45
TraesCS3B01G445300.1	Wheat	nucleus	63.56	79.44
TraesCS3A01G387000.1	Wheat	nucleus	64.0	79.12
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	76.0	78.08
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	77.78	77.78
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	76.0	77.73
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	77.33	77.68
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	76.89	77.23
TraesCS3A01G386900.1	Wheat	nucleus	49.33	77.08
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	77.33	76.99
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	61.33	76.24
TraesCS3D01G382200.1	Wheat	nucleus	68.89	75.98
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	75.56	75.89
TraesCS3A01G386800.1	Wheat	cytosol	62.22	75.27
HORVU3Hr1G100530.1	Barley	cytosol	69.78	74.76
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	71.11	74.42
GSMUA_Achr7P11400_001	Banana	cytosol	51.56	72.96
TraesCS3A01G387200.1	Wheat	nucleus	36.44	69.49
Zm00001d007933_P001	Maize	plastid	48.89	65.09
VIT_09s0002g01160.t01	Wine grape	cytosol	47.11	59.89
Bra030901.1-P	Field mustard	nucleus	47.56	59.78
CDY02479	Canola	nucleus	47.56	59.78
CDY56625	Canola	nucleus	47.56	59.78
Solyc04g010090.2.1	Tomato	nucleus	42.67	59.63
CDY26139	Canola	cytosol, nucleus, plastid	41.33	59.62
PGSC0003DMT400029923	Potato	nucleus	47.11	57.92
AT1G54140.1	Thale cress	nucleus	46.67	57.38
KRH50675	Soybean	cytosol	44.0	56.9
KRH02410	Soybean	cytosol	44.44	56.5
KRH73515	Soybean	cytosol	41.33	51.67
CDY33086	Canola	plastid	24.44	47.41
HORVU3Hr1G081540.4	Barley	plastid	40.44	37.45
Zm00001d008371_P001	Maize	cytosol	34.67	31.2
GSMUA_Achr10P...	Banana	cytosol	46.67	26.45

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100191949	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	UniProt:B4FAS0	EMBL:BT034208
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	ProteinID:ONL98819.1	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6	SUPFAM:SSF47113
InterPro:TFIID-31	UniParc:UPI00017B61EC	EnsemblPlantsGene:Zm00001d029473	EnsemblPlants:Zm00001d029473_P001	EnsemblPlants:Zm00001d029473_T001	SEG:seg

Description

Transcription initiation factor TFIID subunit 9

Coordinates

chr1:+:72294486..72300404

Molecular Weight (calculated)

24429.5 Da

IEP (calculated)

4.805

GRAVY (calculated)

-0.605

Length

225 amino acids

Sequence
(BLAST)

001: MDAAGARPSA PSAAAAAVAG ASVADEPRDA RVVRELLRSM GLGEGEYEPR VVHQFLDLAY RYVGDVLGDA QVYADHAGKA QIDADDVRLA IQAKVNFSFS
101: QPPPREVLLE LARSRNRMPL PKSIAPPGSI PLPPEQDTLL AQNYQLLPPL KPPPQYEENE DENEESNPSL TPNPANSNPT FSQDQRSNEQ QHTPQHGQRV
201: SFQLNAVAAA AAKRPRMTVD QLNIG

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.