Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G022460.1 | |
| HORVU3Hr1G084430.4 | |
| HORVU7Hr1G113760.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54140.1 | HORVU3Hr1G084430.4 | AT3G10070.1 | 17340043 |
| AT1G54140.1 | HORVU0Hr1G022460.1 | AT5G25150.1 | 17340043 |
| AT1G54140.1 | HORVU7Hr1G113760.2 | AT5G25150.1 | 17340043 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G387200.1 | Wheat | nucleus | 41.56 | 85.59 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 40.74 | 47.14 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 38.27 | 41.52 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 27.16 | 41.51 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 38.68 | 41.23 |
| Zm00001d029473_P001 | Maize | plastid | 37.45 | 40.44 |
| CDY33086 | Canola | plastid | 18.11 | 37.93 |
| Zm00001d047265_P001 | Maize | plastid | 37.04 | 36.0 |
| Solyc04g010090.2.1 | Tomato | nucleus | 23.05 | 34.78 |
| Bra030901.1-P | Field mustard | nucleus | 24.28 | 32.96 |
| CDY02479 | Canola | nucleus | 24.28 | 32.96 |
| CDY56625 | Canola | nucleus | 23.87 | 32.4 |
| AT1G54140.1 | Thale cress | nucleus | 24.28 | 32.24 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 23.46 | 32.2 |
| PGSC0003DMT400029923 | Potato | nucleus | 23.87 | 31.69 |
| KRH02410 | Soybean | cytosol | 20.99 | 28.81 |
| CDY26139 | Canola | cytosol, nucleus, plastid | 18.11 | 28.21 |
| KRH50675 | Soybean | cytosol | 20.16 | 28.16 |
| KRH73515 | Soybean | cytosol | 18.93 | 25.56 |
| GSMUA_Achr10P... | Banana | cytosol | 23.46 | 14.36 |
| HORVU2Hr1G031760.1 | Barley | cytosol, nucleus | 4.94 | 12.5 |
| HORVU3Hr1G081440.3 | Barley | cytosol | 4.53 | 9.65 |
| HORVU3Hr1G091670.2 | Barley | cytosol, mitochondrion, nucleus | 3.7 | 8.11 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G081540.4 | EnsemblPlantsGene:HORVU3Hr1G081540 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 | SEG:seg | UniParc:UPI000B47B6F4 |
| UniProt:A0A287LXB0 | MapMan:15.3.4.3.3 | MapMan:15.3.5.3.9 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:594959315..594963283
Molecular Weight (calculated)
26418.4 Da
IEP (calculated)
10.781
GRAVY (calculated)
-0.948
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: PPHQPRQDTA IRPWTAAACG HRFRPPRRWE EPPSRTSRAT RAWCGSSSGR WGSARASTSR ASWASSWTWH TGTSGTCSAT PRSTPTTQPS PRSTPTTSAS
101: PSRPMSTSPS PSRRPARWMT SHFADVTQVL LELARSRNKI PLPKSIAPPG SIPLPPEQDT LLSENYQLLP TLKPPTQTEE AEDDNEGDDA IPTNPSPNYS
201: QDQRGSGQPQ PQSQSQRVSF QLNAVAAAAA KHPLVTTDQL NMG
101: PSRPMSTSPS PSRRPARWMT SHFADVTQVL LELARSRNKI PLPKSIAPPG SIPLPPEQDT LLSENYQLLP TLKPPTQTEE AEDDNEGDDA IPTNPSPNYS
201: QDQRGSGQPQ PQSQSQRVSF QLNAVAAAAA KHPLVTTDQL NMG
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.