Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26139 | Canola | cytosol, nucleus, plastid | 54.31 | 40.38 |
| CDY56625 | Canola | nucleus | 62.07 | 40.22 |
| CDY02479 | Canola | nucleus | 59.48 | 38.55 |
| GSMUA_Achr7P11400_001 | Banana | cytosol | 51.72 | 37.74 |
| TraesCS3A01G386900.1 | Wheat | nucleus | 46.55 | 37.5 |
| Solyc04g010090.2.1 | Tomato | nucleus | 49.14 | 35.4 |
| VIT_09s0002g01160.t01 | Wine grape | cytosol | 53.45 | 35.03 |
| KRH50675 | Soybean | cytosol | 50.86 | 33.91 |
| TraesCS3A01G387200.1 | Wheat | nucleus | 34.48 | 33.9 |
| KRH02410 | Soybean | cytosol | 51.72 | 33.9 |
| PGSC0003DMT400029923 | Potato | nucleus | 52.59 | 33.33 |
| TraesCS3A01G387000.1 | Wheat | nucleus | 51.72 | 32.97 |
| TraesCS3B01G445300.1 | Wheat | nucleus | 50.0 | 32.22 |
| TraesCS3A01G386800.1 | Wheat | cytosol | 50.0 | 31.18 |
| TraesCS3B01G421800.1 | Wheat | cytosol, nucleus, plastid | 43.1 | 31.06 |
| KRH73515 | Soybean | cytosol | 46.55 | 30.0 |
| TraesCS3B01G421900.1 | Wheat | cytosol, nucleus, plastid | 46.55 | 29.83 |
| HORVU3Hr1G100530.1 | Barley | cytosol | 50.86 | 28.1 |
| TraesCS3D01G382100.1 | Wheat | cytosol, nucleus, plastid | 52.59 | 27.85 |
| TraesCS3B01G421700.1 | Wheat | cytosol, nucleus, plastid | 52.59 | 26.99 |
| TraesCS3B01G422000.1 | Wheat | cytosol, nucleus, plastid | 50.86 | 26.94 |
| TraesCS3B01G421600.1 | Wheat | cytosol, nucleus, plastid | 50.86 | 26.82 |
| Os03t0408500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 51.72 | 26.79 |
| TraesCS3D01G406000.1 | Wheat | cytosol, nucleus, plastid | 49.14 | 26.51 |
| TraesCS3D01G468500.1 | Wheat | cytosol, nucleus, plastid | 50.86 | 26.34 |
| TraesCS3B01G516000.1 | Wheat | cytosol, nucleus, plastid | 50.86 | 26.34 |
| TraesCS3A01G472800.1 | Wheat | cytosol, nucleus, plastid | 50.86 | 26.22 |
| TraesCS3D01G382300.2 | Wheat | cytosol, nucleus, plastid | 49.14 | 25.91 |
| EER94702 | Sorghum | cytosol, nucleus, plastid | 49.14 | 25.0 |
| TraesCS3D01G382200.1 | Wheat | nucleus | 43.97 | 25.0 |
| Zm00001d029473_P001 | Maize | plastid | 47.41 | 24.44 |
| Zm00001d047265_P001 | Maize | plastid | 47.41 | 22.0 |
| HORVU3Hr1G081540.4 | Barley | plastid | 37.93 | 18.11 |
| HORVU3Hr1G081440.3 | Barley | cytosol | 16.38 | 16.67 |
| Zm00001d007933_P001 | Maize | plastid | 22.41 | 15.38 |
| HORVU3Hr1G091670.2 | Barley | cytosol, mitochondrion, nucleus | 13.79 | 14.41 |
| GSMUA_Achr10P... | Banana | cytosol | 46.55 | 13.6 |
| Zm00001d008371_P001 | Maize | cytosol | 23.28 | 10.8 |
| Os07t0612500-00 | Rice | nucleus | 25.0 | 6.82 |
| HORVU2Hr1G031760.1 | Barley | cytosol, nucleus | 5.17 | 6.25 |
Protein Annotations
| EnsemblPlants:CDY33086 | EnsemblPlantsGene:GSBRNA2T00053732001 | GO:A0A078H5G1 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:TFIID-31 | PANTHER:PTHR12595 | PANTHER:PTHR12595:SF6 |
| PFAM:PF02291 | ProteinID:CDY33086 | ProteinID:CDY33086.1 | UniParc:UPI0004EC39F3 | UniProt:A0A078H5G1 | MapMan:15.3.4.3.3 |
| MapMan:15.3.5.3.9 | : | : | : | : | : |
Description
BnaC06g06930DBnaC06g06930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5G1]
Coordinates
chrLK032305:+:371145..371648
Molecular Weight (calculated)
12739.1 Da
IEP (calculated)
4.656
GRAVY (calculated)
-0.597
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MSANPPSTVT DVKLAIQSKV SFRFSQPPPR EVEILLELTA GRNKIPLPKS IAGPSVPLPP EQDTLLSPNY QLIILSKKPA STEPEETEDN EDMTNPAQQT
101: SELRSRNSSK DLFPSL
101: SELRSRNSSK DLFPSL
001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK
Arabidopsis Description
TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.