Factsheet for Zm00001d008371_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016330_P001
Zm00001d025112_P001
Zm00001d042792_P002
Zm00001d044810_P001
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT1G54140.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT1G54140.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G081440.3	Barley	cytosol	26.0	57.02
Zm00001d007933_P001	Maize	plastid	38.0	56.21
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	23.2	52.25
GSMUA_Achr7P11400_001	Banana	cytosol	26.4	41.51
Solyc04g010090.2.1	Tomato	nucleus	22.8	35.4
Zm00001d029473_P001	Maize	plastid	31.2	34.67
CDY56625	Canola	nucleus	23.2	32.4
CDY26139	Canola	cytosol, nucleus, plastid	20.0	32.05
PGSC0003DMT400029923	Potato	nucleus	23.2	31.69
Bra030901.1-P	Field mustard	nucleus	22.4	31.28
CDY02479	Canola	nucleus	22.4	31.28
Zm00001d047265_P001	Maize	plastid	31.2	31.2
VIT_09s0002g01160.t01	Wine grape	cytosol	22.0	31.07
KRH02410	Soybean	cytosol	21.2	29.94
KRH50675	Soybean	cytosol	20.8	29.89
AT1G54140.1	Thale cress	nucleus	21.6	29.51
KRH73515	Soybean	cytosol	19.6	27.22
CDY33086	Canola	plastid	10.8	23.28
GSMUA_Achr10P...	Banana	cytosol	26.4	16.62

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	Gene3D:2.130.10.10	UniProt:A0A1D6FCA1	ProteinID:AQK89679.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR001680	InterPro:IPR009072	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF02291	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR12595	PANTHER:PTHR12595:SF6	SMART:SM00320	SUPFAM:SSF47113	SUPFAM:SSF50978	InterPro:TFIID-31
TMHMM:TMhelix	UniParc:UPI0008431AFF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d008371	EnsemblPlants:Zm00001d008371_P001	EnsemblPlants:Zm00001d008371_T001	:	:

Description

Transcription initiation factor TFIID subunit 9

Coordinates

chr8:-:6658626..6660882

Molecular Weight (calculated)

27566.7 Da

IEP (calculated)

4.863

GRAVY (calculated)

0.124

Length

250 amino acids

Sequence
(BLAST)

001: MGLGEGEYEP RVVHQFLDLA YRYVGDVLGD AQVYADHVGK AQIDANDVRL AIQAKVNFSF SQPPPREVPI VPYSQFGQIS WLMFIFFYPR QIVAFSLGWF
101: CTAESMKPNY FAARVVETRF RISFVFAGLV WSLLNSVNDA IIVGDKLVSC SSDTTIKVWN CFSDGACTRT LHRHSDYVIC LAAAENNSNI VASGGLGGEV
201: FIWDLDAALA PVAKSVDAKE DEVPNGNSGP ALTTLCSMNS SSYYVDKRFL

Best Arabidopsis Sequence Match ( AT3G05090.1 )
(BLAST)

001: MHRVGSAGSN GGSVRTRKEK KLTYVLNDAN DTKHCAGINC LDVLKSSVSN DQSYLFTGSR DGTLKRWAFD EDATFCSATF ESHVDWVNDA ALAGESTLVS
101: CSSDTTVKTW DGLSDGVCTR TLRQHSDYVT CLAVAAKNNN VVASGGLGGE VFIWDIEAAL SPVTKPNDAN EDSSSNGANG PVTSLRTVGS SNNISVQSSP
201: SHGYTPTIAK GHKESVYALA MNDTGTMLVS GGTEKVLRVW DPRTGSKSMK LRGHTDNVRV LLLDSTGRFC LSGSSDSMIR LWDLGQQRCL HTYAVHTDSV
301: WALACNPSFS HVYSGGRDQC LYLTDLATRE SVLLCTKEHP IQQLALQDNS IWVATTDSSV ERWPAEVQSP KTVFQRGGSF LAGNLSFNRA RVSLEGLNPA
401: PAYKEPSITV PGTHPIVQHE ILNNKRQILT KDAAGSVKLW DITRGVVVED YGKISFEEKK EELFEMVSIP SWFTVDTRLG CLSVHLETPQ CFSAEMYSAD
501: LKVSGRPEDD KINLARETLK GLLGHWLAKK KHKPKPQVLA SGDTLSVKDT KKNLSASKTE ESSAASDPVY PPFEFSSVSP PSIITEGSQG GPWRKKITEF
601: TGTEDEKDFP LWCLDAVLNN RLPPRENTKL SFFLHPCEGS SVQVVTLGKL SAPRILRVHK VTNYVVEKMV LDNPLDSLAI DAASVSGGQP QPLFSGNGLL
701: QSGLKPWQKL RPSIEILCNS QVLSPDMSLA TVRAYVWKKP EDLILNYRVA IAR

Arabidopsis Description

LRS1AT3g05090/T12H1_5 [Source:UniProtKB/TrEMBL;Acc:Q93ZS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.