Factsheet for Zm00001d007933_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016330_P001
Zm00001d025112_P001
Zm00001d042792_P002
Zm00001d044810_P001
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT1G54140.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT1G54140.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT1G54140.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	46.15	70.27
HORVU3Hr1G081440.3	Barley	cytosol	42.6	63.16
Zm00001d029473_P001	Maize	plastid	65.09	48.89
Zm00001d047265_P001	Maize	plastid	62.13	42.0
GSMUA_Achr7P11400_001	Banana	cytosol	39.05	41.51
CDY26139	Canola	cytosol, nucleus, plastid	36.69	39.74
PGSC0003DMT400029923	Potato	nucleus	41.42	38.25
Zm00001d008371_P001	Maize	cytosol	56.21	38.0
Solyc04g010090.2.1	Tomato	nucleus	36.09	37.89
VIT_09s0002g01160.t01	Wine grape	cytosol	39.05	37.29
CDY56625	Canola	nucleus	38.46	36.31
CDY02479	Canola	nucleus	38.46	36.31
Bra030901.1-P	Field mustard	nucleus	38.46	36.31
KRH50675	Soybean	cytosol	37.28	36.21
AT1G54140.1	Thale cress	nucleus	39.05	36.07
KRH02410	Soybean	cytosol	36.69	35.03
KRH73515	Soybean	cytosol	34.91	32.78
CDY33086	Canola	plastid	15.38	22.41
GSMUA_Achr10P...	Banana	cytosol	36.69	15.62

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	UniProt:A0A1D6FA13	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006352
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:ONM27947.1
PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6	SUPFAM:SSF47113	InterPro:TFIID-31	UniParc:UPI000221D834
EnsemblPlantsGene:Zm00001d007933	EnsemblPlants:Zm00001d007933_P001	EnsemblPlants:Zm00001d007933_T001	SEG:seg	:	:

Description

Transcription initiation factor TFIID subunit 9

Coordinates

chr2:+:243388294..243389628

Molecular Weight (calculated)

17813.8 Da

IEP (calculated)

4.376

GRAVY (calculated)

-0.107

Length

169 amino acids

Sequence
(BLAST)

001: MDAAGARPST PSAAAAAVVG ASVADEPRDA RVVRELLRSM GLGEGEYEPR VVHQFLDLAY RYVGDVLGDA QVYADHAGKA QIDADDVRLA IQAKVNFSFS
101: QPPSRESNIV ASGGLGGEVF IWDLDAALAP VAKSVDAKED EVPNGNSGPA LTTLCSINSS SYYVDKRFL

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.