CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH15679
KRH30849
KRH32724
KRH52333
KRH61671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	KRH30849	AT3G10070.1	17340043
AT1G54140.1	KRH32724	AT3G10070.1	17340043
AT1G54140.1	KRG99418	AT5G25150.1	17340043
AT1G54140.1	KRH05348	AT5G25150.1	17340043
AT1G54140.1	KRH15679	AT5G25150.1	17340043
AT1G54140.1	KRH52333	AT5G25150.1	17340043
AT1G54140.1	KRH61671	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50675	Soybean	cytosol	95.48	97.13
KRH73515	Soybean	cytosol	82.49	81.11
VIT_09s0002g01160.t01	Wine grape	cytosol	74.01	74.01
Bra030901.1-P	Field mustard	nucleus	71.75	70.95
CDY02479	Canola	nucleus	71.75	70.95
AT1G54140.1	Thale cress	nucleus	72.88	70.49
CDY26139	Canola	cytosol, nucleus, plastid	61.58	69.87
Solyc04g010090.2.1	Tomato	nucleus	61.58	67.7
CDY56625	Canola	nucleus	68.36	67.6
PGSC0003DMT400029923	Potato	nucleus	69.49	67.21
GSMUA_Achr7P11400_001	Banana	cytosol	59.32	66.04
CDY33086	Canola	plastid	33.9	51.72
TraesCS3A01G387000.1	Wheat	nucleus	53.11	51.65
TraesCS3B01G421800.1	Wheat	cytosol, nucleus, plastid	46.89	51.55
TraesCS3B01G445300.1	Wheat	nucleus	51.98	51.11
HORVU3Hr1G081440.3	Barley	cytosol	31.64	49.12
TraesCS3A01G386900.1	Wheat	nucleus	39.55	48.61
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	60.45	47.77
TraesCS3A01G386800.1	Wheat	cytosol	49.72	47.31
TraesCS3D01G382100.1	Wheat	cytosol, nucleus, plastid	58.19	47.03
TraesCS3B01G422000.1	Wheat	cytosol, nucleus, plastid	57.63	46.58
TraesCS3B01G421600.1	Wheat	cytosol, nucleus, plastid	57.63	46.36
TraesCS3D01G382200.1	Wheat	nucleus	53.11	46.08
TraesCS3D01G382300.2	Wheat	cytosol, nucleus, plastid	57.06	45.91
TraesCS3D01G468500.1	Wheat	cytosol, nucleus, plastid	57.63	45.54
TraesCS3B01G421700.1	Wheat	cytosol, nucleus, plastid	57.63	45.13
TraesCS3D01G406000.1	Wheat	cytosol, nucleus, plastid	54.8	45.12
HORVU3Hr1G091670.2	Barley	cytosol, mitochondrion, nucleus	28.25	45.05
TraesCS3B01G421900.1	Wheat	cytosol, nucleus, plastid	45.76	44.75
EER94702	Sorghum	cytosol, nucleus, plastid	57.63	44.74
TraesCS3B01G516000.1	Wheat	cytosol, nucleus, plastid	56.5	44.64
TraesCS3A01G472800.1	Wheat	cytosol, nucleus, plastid	56.5	44.44
Zm00001d029473_P001	Maize	plastid	56.5	44.44
HORVU3Hr1G100530.1	Barley	cytosol	52.54	44.29
TraesCS3A01G387200.1	Wheat	nucleus	27.12	40.68
Zm00001d047265_P001	Maize	plastid	56.5	40.0
Zm00001d007933_P001	Maize	plastid	35.03	36.69
HORVU2Hr1G031760.1	Barley	cytosol, nucleus	19.77	36.46
GSMUA_Achr10P...	Banana	cytosol	52.54	23.43
Zm00001d008371_P001	Maize	cytosol	29.94	21.2
HORVU3Hr1G081540.4	Barley	plastid	28.81	20.99
Os07t0612500-00	Rice	nucleus	32.2	13.41

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100306277	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	EMBL:ACUP02010305	EMBL:BT090309
UniProt:C6SYR1	EnsemblPlantsGene:GLYMA_17G037200	GO:GO:0000124	GO:GO:0001075	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006366	GO:GO:0006464	GO:GO:0008134	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0043966	GO:GO:0044212	GO:GO:0045944	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold
InterPro:IPR009072	EnsemblPlants:KRH02410	ProteinID:KRH02410	ProteinID:KRH02410.1	PFAM:PF02291	PANTHER:PTHR12595
PANTHER:PTHR12595:SF6	SUPFAM:SSF47113	InterPro:TFIID-31	UniParc:UPI0001B1595F	:	:

Description

hypothetical protein

Coordinates

chr17:+:2709179..2712605

Molecular Weight (calculated)

20064.8 Da

IEP (calculated)

4.931

GRAVY (calculated)

-0.740

Length

177 amino acids

Sequence
(BLAST)

001: MGDKEEESAM PRDAKIVKSL LKSMGVEDYE PRVIHKFLEL WYRYVVDVLT DAQVYSEHAG KPAIDCDDVK LAIQSKVNFS FSQPPPREVL LELAQNRNKI
101: PLPKTIAGPG IPLPPDQDTL ISPNYQFAIP NKRPAQPLEE TEDEEATIPN PSQEQKVDTQ PNPHQRVSFP LPKRQKD

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.