Factsheet for Os07t0612500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0858500-01
Os07t0205200-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54140.1	Os01t0858500-01	AT3G10070.1	17340043
AT1G54140.1	Os07t0205200-02	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G031760.1	Barley	cytosol, nucleus	12.71	56.25
Os03t0408500-01	Rice	cytosol, mitochondrion, nucleus, plastid	20.71	39.29
GSMUA_Achr7P11400_001	Banana	cytosol	13.65	36.48
KRH73515	Soybean	cytosol	13.88	32.78
VIT_09s0002g01160.t01	Wine grape	cytosol	13.65	32.77
KRH50675	Soybean	cytosol	13.41	32.76
CDY26139	Canola	cytosol, nucleus, plastid	12.0	32.69
KRH02410	Soybean	cytosol	13.41	32.2
Bra030901.1-P	Field mustard	nucleus	13.41	31.84
CDY02479	Canola	nucleus	13.41	31.84
PGSC0003DMT400029923	Potato	nucleus	13.41	31.15
Solyc04g010090.2.1	Tomato	nucleus	11.76	31.06
CDY56625	Canola	nucleus	12.94	30.73
AT1G54140.1	Thale cress	nucleus	13.18	30.6
CDY33086	Canola	plastid	6.82	25.0
GSMUA_Achr10P...	Banana	cytosol	13.65	14.61

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.3	MapMan:15.3.5.3.9	ProteinID:BAC21319.1	ProteinID:BAT02619.1	ProteinID:EAZ40638.1
GO:GO:0000124	GO:GO:0001075	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0006366	GO:GO:0006464	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0043966	GO:GO:0044212
GO:GO:0045944	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os07g0612500
EnsemblPlants:Os07t0612500-00	PFAM:PF02291	PANTHER:PTHR12595	PANTHER:PTHR12595:SF6	UniProt:Q8H5X9	SUPFAM:SSF47113
InterPro:TFIID-31	UniParc:UPI00000AD50D	SEG:seg	:	:	:

Description

Transcription factor TAFII-31 domain containing protein. (Os07t0612500-00)

Coordinates

chr7:-:25219509..25223053

Molecular Weight (calculated)

47005.8 Da

IEP (calculated)

4.343

GRAVY (calculated)

-0.773

Length

425 amino acids

Sequence
(BLAST)

001: MDTGADQAPP PPPPPPVAAA SAAADEPRDL RVVREILHSL GLREGDYEEA AVHKLLLFAH RYAGDVLGEA KAYAGHAGRE SLQADDVRLA IQARGMSSAA
101: PPSREEMLDI AHKCNEIPIP KPCVPSGSIS LPHYEDMLLN KKHIFVPRVE PTPHQIEETE DDYNDDGSNA NVASPNSNYD QDLFGSISLP HYQDMLLNQN
201: HLSVHRVEPA HDQLEKIKDD GSNDNADSSH SNYVQDSSGS VSLQHHQDMS LNQNHLFVHQ VELTLDQIEE IKDDGSNDNV DSPNFNCVQD PSRSVSFPHY
301: QVMPLNQNHL SFHQVEPMLD QVEEIKDDSS NDNVASLDSN CIQDPHYQDM LLNQDHLSVR GVEPTLDQVE EIEDDCSSDN VASPDSNYDK EKNDSNKQKP
401: SKKVSQLNTL VAAGKDKVDC STELS

Best Arabidopsis Sequence Match ( AT1G54140.1 )
(BLAST)

001: MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK PNIDCDDVKL AIQSKVNFSF SQPPPREVLL ELAASRNKIP
101: LPKSIAGPGV PLPPEQDTLL SPNYQLVIPK KSVSTEPEET EDDEEMTDPG QSSQEQQQQQ QQTSDLPSQT PQRVSFPLSR RPK

Arabidopsis Description

TAF9TAFII21 [Source:UniProtKB/TrEMBL;Acc:A0A178W640]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.