Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G467500.1 | Wheat | nucleus | 62.45 | 65.56 |
| Os06t0649500-01 | Rice | nucleus | 80.24 | 31.04 |
| VIT_04s0008g05780.t01 | Wine grape | nucleus | 69.17 | 25.89 |
| AT5G25150.1 | Thale cress | nucleus | 64.43 | 24.36 |
| Bra036534.1-P | Field mustard | nucleus | 63.64 | 24.1 |
| CDY19814 | Canola | nucleus | 63.64 | 24.1 |
| CDX87098 | Canola | nucleus | 63.24 | 23.95 |
| Bra020485.1-P | Field mustard | nucleus | 61.26 | 23.27 |
| CDY05473 | Canola | nucleus | 61.26 | 23.27 |
| CDY05378 | Canola | nucleus | 60.47 | 23.04 |
| Os07t0405100-01 | Rice | cytosol | 12.25 | 5.59 |
| Os03t0355200-00 | Rice | cytosol, nucleus, plastid | 10.28 | 4.96 |
| Os03t0355400-00 | Rice | cytosol, nucleus, plastid | 10.28 | 4.96 |
| Os11t0660300-01 | Rice | cytosol | 5.14 | 4.02 |
| Os04t0592700-01 | Rice | nucleus | 12.65 | 3.59 |
| Os03t0151700-01 | Rice | nucleus | 11.86 | 3.19 |
| Os07t0252000-01 | Rice | cytosol | 3.16 | 2.27 |
Protein Annotations
| EnsemblPlants:Os07t0205200-02 | EnsemblPlantsGene:Os07g0205200 | Gene3D:1.25.40.500 | InterPro:IPR037264 | InterPro:TFIID_NTD2 | InterPro:TFIID_NTD2_sf |
| ncoils:Coil | PANTHER:PTHR19879 | PFAM:PF04494 | ProteinID:BAT00540.1 | SUPFAM:SSF160897 | UniParc:UPI0003938C61 |
| UniProt:A0A0P0X3L9 | MapMan:15.3.4.3.1 | MapMan:15.3.5.3.5 | : | : | : |
Description
Hypothetical conserved gene. (Os07t0205200-01);Similar to TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator. (Os07t0205200-02)
Coordinates
chr7:+:5661353..5667669
Molecular Weight (calculated)
28316.9 Da
IEP (calculated)
6.891
GRAVY (calculated)
-0.417
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: KKLESILSPL HLEQMEVARS LRQNKFRIKL CEYSYELLLQ YLHKTQALVV LGIINERIDF QVSPGQSPLI IDDSDAVVLI GTSKDLTKQI NQKEVHWGIL
101: EDSLEERMEK AISDSDKTEI ESKDADTEDN KKRSSEGGKQ GGSHKKIKKD KFVGTTGKNM KSETSMVSIA PRVKPELTLP MTSVEVEQSI LEDLRNRAQL
201: NSLSLPSVSF YTFLNTHNGL NCSSISHDGS LVVGGFADSS VKASPFRWHL LIM
101: EDSLEERMEK AISDSDKTEI ESKDADTEDN KKRSSEGGKQ GGSHKKIKKD KFVGTTGKNM KSETSMVSIA PRVKPELTLP MTSVEVEQSI LEDLRNRAQL
201: NSLSLPSVSF YTFLNTHNGL NCSSISHDGS LVVGGFADSS VKASPFRWHL LIM
001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RVSYAFFTRI NSTIL
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RVSYAFFTRI NSTIL
Arabidopsis Description
TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.