Factsheet for Os12t0574800-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0338100-00
Os01t0846900-01
Os01t0858500-01
Os02t0654400-01
Os03t0441000-01
Os03t0603300-01
Os07t0205200-02
Os12t0574800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	Os01t0338100-00	AT1G02680.1	17340043
AT4G34340.1	Os01t0846900-01	AT1G17440.1	17340043
AT4G34340.1	Os02t0654400-01	AT1G27720.1	17340043
AT4G34340.1	Os03t0441000-01	AT1G27720.1	17340043
AT4G34340.1	Os01t0858500-01	AT3G10070.1	17340043
AT4G34340.1	Os03t0603300-01	AT4G34340.1	17340043
AT4G34340.1	Os12t0574800-02	AT4G34340.1	17340043
AT4G34340.1	Os07t0205200-02	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G084700.1	Wheat	cytosol	76.78	77.62
TraesCS5A01G081700.1	Wheat	cytosol	76.78	77.62
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	75.41	76.67
Zm00001d041530_P001	Maize	cytosol	72.13	73.95
EES17247	Sorghum	cytosol	73.77	73.37
EES15849	Sorghum	cytosol	74.04	72.07
Zm00001d041766_P001	Maize	cytosol	70.22	69.46
Os03t0603300-01	Rice	cytosol, plastid	39.62	51.97
GSMUA_Achr9P26740_001	Banana	nucleus	41.53	46.48
GSMUA_Achr11P...	Banana	nucleus	42.35	42.94
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	41.53	41.3
GSMUA_Achr9P09310_001	Banana	nucleus	36.34	39.94
KRH19914	Soybean	cytosol	37.43	38.7
Solyc09g008150.1.1	Tomato	nucleus	38.8	38.07
PGSC0003DMT400009911	Potato	nucleus	37.98	37.17
KRH32528	Soybean	cytosol	36.07	37.08
VIT_14s0068g00340.t01	Wine grape	nucleus	37.7	36.6
AT4G34340.1	Thale cress	nucleus	35.25	36.54
KRH01313	Soybean	cytosol	36.07	34.65
KRH45059	Soybean	cytosol	34.97	33.6
Bra011521.1-P	Field mustard	nucleus	31.15	32.95
CDX75423	Canola	nucleus	31.15	32.85
CDY69783	Canola	nucleus	31.97	32.59
Os02t0699900-01	Rice	cytosol, nucleus, plastid	20.49	31.38
Bra023525.1-P	Field mustard	cytosol	30.87	29.97
Bra008690.1-P	Field mustard	nucleus	28.42	28.73
Bra039159.1-P	Field mustard	nucleus	28.69	27.85
AT5G15570.1	Thale cress	nucleus	28.42	27.3
CDY43254	Canola	nucleus	26.78	27.22
CDY60474	Canola	nucleus	27.87	27.06
AT3G02160.1	Thale cress	cytosol	29.23	26.95
CDX74271	Canola	cytosol	25.96	25.33
Bra001033.1-P	Field mustard	cytosol	25.96	25.13
CDX91978	Canola	cytosol, extracellular, nucleus	25.41	23.91

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	ProteinID:ABA98992.1	ProteinID:ABA98993.1	ProteinID:ABA98994.1	EMBL:AK073004
EMBL:AK102465	EMBL:AK121687	ProteinID:BAT17768.1	InterPro:BTP	ncoils:Coil	ProteinID:EAZ20960.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
EnsemblPlantsGene:Os12g0574800	EnsemblPlants:Os12t0574800-02	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF45
UniProt:Q2QN90	SMART:SM00576	InterPro:TFIID_su8_C	UniParc:UPI0000680D93	SEG:seg	:

Description

Conserved hypothetical protein. (Os12t0574800-02);Bromodomain transcription factor domain containing protein. (Os12t0574800-03)

Coordinates

chr12:-:23725985..23729782

Molecular Weight (calculated)

39747.4 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.407

Length

366 amino acids

Sequence
(BLAST)

001: MSGGGGGGGG SGSGSGSRDE YGRAVARAAV AQALEAAGFD CAHRSAVDAL VDVILRYVVH LGRTAAFNAN LAGRVLANEY DIIQALEEIG TDFDGFVGAA
101: TSDRCLVGSG VVRELIDYVE SKPEVPFVRP LPSFPVPRVE PQPAQSFAMA GKESGMKHVP EWLPVFPDPH TYIRTEVWSE EEAKARVDKV EQVRQRRKAE
201: KSLLSLQRRL ALAGADGFRP AVTENTAEKG KEIQVAGSKR NPFLEPALPP GEKEVSDVAM QPQRRKISVL DAFAPAIQAA NMMDIDTGPG WDNNQNQKSI
301: VPKERAPVHL KIGIDKKPLS AVLNSKPLDL REDPSFLKEE VKDERKRRAG MILRASMENP QELPQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.