Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07408 | Sorghum | mitochondrion, plastid | 53.56 | 51.82 |
| Zm00001d000165_P001 | Maize | mitochondrion | 53.97 | 51.81 |
| Zm00001d050853_P001 | Maize | cytosol | 39.33 | 41.05 |
| KRH27180 | Soybean | plastid | 18.41 | 27.33 |
| PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 29.29 | 25.83 |
| Solyc02g069170.1.1 | Tomato | mitochondrion | 29.71 | 25.36 |
| VIT_01s0011g01670.t01 | Wine grape | nucleus | 25.94 | 24.41 |
| KRH17259 | Soybean | plastid | 27.2 | 23.81 |
| KRH72903 | Soybean | cytosol | 27.62 | 22.76 |
| AT1G31240.1 | Thale cress | nucleus | 24.69 | 21.3 |
| Bra023170.1-P | Field mustard | nucleus | 23.85 | 20.58 |
| Os12t0574800-02 | Rice | nucleus | 31.38 | 20.49 |
| CDY02371 | Canola | cytosol | 17.99 | 17.99 |
| Os03t0603300-01 | Rice | cytosol, plastid | 18.41 | 15.77 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.8 | EntrezGene:9270043 | ProteinID:BAD07513.1 | ProteinID:BAD07884.1 | ProteinID:BAH91855.1 |
| ProteinID:BAS80456.1 | InterPro:BTP | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | EnsemblPlantsGene:Os02g0699900 | EnsemblPlants:Os02t0699900-01 | PFAM:PF07524 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF38 | UniProt:Q6Z8D5 | SMART:SM00576 | UniParc:UPI0000236700 | RefSeq:XP_015625772.1 | SEG:seg |
Description
Bromodomain transcription factor containing protein. (Os02t0699900-01)
Coordinates
chr2:+:28794171..28795262
Molecular Weight (calculated)
25667.5 Da
IEP (calculated)
10.491
GRAVY (calculated)
-0.545
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTPARAPRE AAGHLPCILQ DAVSRVSTAQ ILHSSGYTAA EPAALRALSD IAGRYVASLG RAASAIAEAR GRTEPNLADL TLALEDHALG GFPGASDPAR
101: PVLRSGALSE LAGFVRVVRE VPFPKPVPRR GGAPRGKAWE SFAAAGKEPP PKHVPRWLPR FPDKPEPEPE PKAAYDEATA RWEARVRHEE EANAEEAVVL
201: KPSVDGGGER RGVVPEKRGK VSFRVRAERK KRRVGLDQQ
101: PVLRSGALSE LAGFVRVVRE VPFPKPVPRR GGAPRGKAWE SFAAAGKEPP PKHVPRWLPR FPDKPEPEPE PKAAYDEATA RWEARVRHEE EANAEEAVVL
201: KPSVDGGGER RGVVPEKRGK VSFRVRAERK KRRVGLDQQ
001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL
Arabidopsis Description
TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.