Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000165_P001 | Maize | mitochondrion | 76.52 | 75.9 |
| Os02t0699900-01 | Rice | cytosol, nucleus, plastid | 51.82 | 53.56 |
| Zm00001d050853_P001 | Maize | cytosol | 44.53 | 48.03 |
| KRH27180 | Soybean | plastid | 18.22 | 27.95 |
| PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 26.72 | 24.35 |
| VIT_01s0011g01670.t01 | Wine grape | nucleus | 24.7 | 24.02 |
| AT1G31240.1 | Thale cress | nucleus | 23.89 | 21.3 |
| Bra023170.1-P | Field mustard | nucleus | 23.89 | 21.3 |
| Solyc02g069170.1.1 | Tomato | mitochondrion | 23.89 | 21.07 |
| KRH17259 | Soybean | plastid | 23.08 | 20.88 |
| KRH72903 | Soybean | cytosol | 23.89 | 20.34 |
| EES15849 | Sorghum | cytosol | 29.55 | 19.41 |
| EES17247 | Sorghum | cytosol | 28.74 | 19.29 |
| CDY02371 | Canola | cytosol | 17.0 | 17.57 |
Protein Annotations
| EnsemblPlants:EES07408 | EnsemblPlantsGene:SORBI_3004G271200 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF38 |
| PFAM:PF07524 | ProteinID:EES07408 | ProteinID:EES07408.1 | ProteinID:OQU85565.1 | RefSeq:XP_002454432.1 | SMART:SM00576 |
| UniParc:UPI0001A861FF | UniProt:C5Y0E6 | MapMan:15.3.5.3.8 | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:61508677..61511361
Molecular Weight (calculated)
26269.2 Da
IEP (calculated)
9.403
GRAVY (calculated)
-0.370
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTPAKHPRA VPRHLQAAVS TVSTAQILRS SGYSAAEPAA LRALSDIAGR YIASLGRTAA AFAEARGRTE PNVADAVLAL EDHALGGFPG ASDPTRPLLC
101: SGALAELAQF VAAVREVPFA KPLPRRDPGC GSSDGWESFA AAGREPPLRH VPQWLPCFPE GWEERVRCQV ASNDEKDAGQ VVTVMNGNGK RGMPENREKL
201: SFRLGQKRQR VKPSNKHGGA FERLTKQGEN SLSIECISSA SNLVIGP
101: SGALAELAQF VAAVREVPFA KPLPRRDPGC GSSDGWESFA AAGREPPLRH VPQWLPCFPE GWEERVRCQV ASNDEKDAGQ VVTVMNGNGK RGMPENREKL
201: SFRLGQKRQR VKPSNKHGGA FERLTKQGEN SLSIECISSA SNLVIGP
001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM
Arabidopsis Description
At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.