CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03388
KXG22553

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	EES03388	AT4G22220.1	21798944
AT1G50420.1	KXG22553	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023248_P001	Maize	cytosol	80.24	91.5
Os12t0138100-00	Rice	cytosol	66.38	77.85
Os11t0141500-00	Rice	cytosol	66.38	77.85
HORVU5Hr1G043310.1	Barley	cytosol	64.99	68.18
TraesCS5B01G133800.1	Wheat	mitochondrion	64.64	67.57
TraesCS5A01G135000.1	Wheat	mitochondrion	64.82	67.39
TraesCS5D01G139500.1	Wheat	mitochondrion	64.99	67.08
CDY68881	Canola	cytosol	20.45	48.36
CDY45059	Canola	cytosol	25.48	48.36
GSMUA_Achr8P09690_001	Banana	cytosol	33.28	43.05
EES02045	Sorghum	cytosol, plastid	34.14	42.92
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	35.18	42.92
EES09233	Sorghum	cytosol	35.7	42.3
Bra018848.1-P	Field mustard	cytosol	32.24	42.27
Bra014251.1-P	Field mustard	cytosol	32.58	42.25
EES16518	Sorghum	cytosol	32.41	41.56
CDY22795	Canola	cytosol, plastid	31.89	41.44
CDY03601	Canola	cytosol	32.24	41.43
VIT_13s0019g01220.t01	Wine grape	cytosol	34.32	41.42
KRH24106	Soybean	cytosol, nucleus, peroxisome	32.58	41.32
KRH29080	Soybean	cytosol	32.58	41.32
Solyc12g099900.1.1	Tomato	nucleus	33.28	41.03
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	32.93	40.86
PGSC0003DMT400011839	Potato	cytosol	32.93	40.6
VIT_06s0009g02390.t01	Wine grape	cytosol	33.28	40.51
KRH27822	Soybean	nucleus, plastid	32.58	39.75
AT1G50420.1	Thale cress	cytosol	32.93	39.42
Os12t0138200-00	Rice	cytosol	34.84	39.41
PGSC0003DMT400058477	Potato	cytosol	32.24	39.41
Solyc01g008910.2.1	Tomato	cytosol	32.24	39.08
Os11t0141700-00	Rice	cytosol	33.97	38.74
KRH62871	Soybean	cytosol	29.29	38.15
KRH29971	Soybean	cytosol	28.77	37.56
OQU83473	Sorghum	cytosol	24.26	33.18
OQU87235	Sorghum	extracellular	16.64	32.54
OQU77884	Sorghum	plasma membrane	23.74	30.11
OQU77885	Sorghum	cytosol	24.44	29.25
KXG36498	Sorghum	cytosol, plastid	21.49	26.96
KXG29713	Sorghum	cytosol	18.54	26.95
EES18409	Sorghum	cytosol	21.14	24.75
EES01920	Sorghum	cytosol	22.53	24.21
EER93592	Sorghum	cytosol	25.82	23.76
KXG22896	Sorghum	cytosol, plasma membrane	21.66	23.72
KXG23987	Sorghum	cytosol	21.49	23.62
OQU81603	Sorghum	cytosol	14.21	22.91
OQU76691	Sorghum	cytosol, extracellular	18.37	22.65
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.14	21.82
EER87757	Sorghum	mitochondrion	22.36	20.25
CDY37137	Canola	plastid	31.54	19.08
OQU82754	Sorghum	plastid	22.7	18.42
GSMUA_Achr11P...	Banana	cytosol	31.54	16.52
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	5.2	8.5
Os11t0141550-01	Rice	cytosol	0.17	0.78

Protein Annotations

EnsemblPlants:KXG22822	EnsemblPlantsGene:SORBI_3008G012800	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF32	PFAM:PF03514	PFscan:PS50985	ProteinID:KXG22822	ProteinID:KXG22822.2	SEG:seg
UniParc:UPI000B4248CB	UniProt:A0A1B6PAT9	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1088839..1091092

Molecular Weight (calculated)

63388.5 Da

IEP (calculated)

8.297

GRAVY (calculated)

-0.231

Length

577 amino acids

Sequence
(BLAST)

001: MNSRPWHGAC LHCNICRHTK IQAQQWRARS PSYPEQRSID QKPRPSKASS LVRISIAHQA GVWTLDMDMF VQEDTLSSAT SSPASSLYTP SPHGHGGLGS
101: SWVQELSHDQ QGLRLINLLY QCAAEVAAGA FDRANFYLEQ ITQLASLDAP HTLQRLAAVF ADALARKLLN LVPGLSRALL STGGNSGEAH LVPAARRHLF
201: DVLPFMKLAY LTTNHAILEA MEGERFVHVV DLSGPAANPV QWIALFHAFR GRRGGPPHLR VTAVHDGREF LANMAAVLAK EAEAFDIPFQ FSAVEAKLEE
301: LDTDALRHVL RVRSGEALAV SVVGQLHRLL AVDDAGGRNS RHVPGSSCLT PVQIIARSSP SSFGELLDRE LNTRLQLSPD SSAVLSMSPQ SSSLSPAHQQ
401: QQQREKAKLG SFLRAVRALS PTLMVVAEPE ANHNAATFLE RFEEALNYYA SLFDCLERAS AAQAHRCAGE RARAERLVLG EEIRGVVARE GAERKERHER
501: LAQWARRMEA AGMERVGLSY AGMMEARKLL QSCGWGGGDY AYQVAHDAGG EAFFFCWHRK PLYSVSAWRP AAACRHT

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.