CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	EES01631	AT2G41090.1	17360592
AT5G66770.1	EES09201	AT2G41090.1	17360592
AT5G66770.1	EES16322	AT2G41090.1	17360592
AT5G66770.1	OQU78227	AT2G41090.1	17360592
AT5G66770.1	EES01631	AT5G21274.1	17360592
AT5G66770.1	EES09201	AT5G21274.1	17360592
AT5G66770.1	EES16322	AT5G21274.1	17360592
AT5G66770.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033834_P001	Maize	cytosol, plastid	93.02	94.37
TraesCS4A01G260600.1	Wheat	cytosol	78.89	80.92
TraesCS4B01G054000.1	Wheat	cytosol	79.07	80.8
TraesCS4D01G054000.1	Wheat	cytosol	79.07	80.36
Os03t0723000-01	Rice	nucleus	81.4	78.72
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	59.75	60.4
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	37.39	59.21
KRH29015	Soybean	cytosol	29.34	57.54
Bra012102.1-P	Field mustard	cytosol	16.82	55.95
GSMUA_AchrUn_...	Banana	cytosol	48.66	50.84
GSMUA_Achr3P30530_001	Banana	cytosol	52.41	50.78
KRH24039	Soybean	cytosol	43.47	50.52
GSMUA_Achr4P07320_001	Banana	cytosol	48.12	47.95
AT5G66770.1	Thale cress	cytosol	49.37	47.26
AT3G50650.1	Thale cress	cytosol	44.19	45.57
Solyc02g085340.1.1	Tomato	cytosol	49.55	45.48
CDY53846	Canola	cytosol	47.41	45.45
PGSC0003DMT400038574	Potato	cytosol	49.55	45.34
CDY72338	Canola	cytosol	47.23	45.13
VIT_04s0023g01660.t01	Wine grape	cytosol	45.98	41.92
KXG29713	Sorghum	cytosol	23.97	33.75
OQU83473	Sorghum	cytosol	24.87	32.94
OQU87235	Sorghum	extracellular	16.1	30.51
EES02045	Sorghum	cytosol, plastid	23.97	29.19
OQU76691	Sorghum	cytosol, extracellular	23.26	27.78
KXG36498	Sorghum	cytosol, plastid	22.54	27.39
KXG22896	Sorghum	cytosol, plasma membrane	24.87	26.38
OQU81603	Sorghum	cytosol	16.64	25.98
EER93592	Sorghum	cytosol	26.83	23.92
EES09233	Sorghum	cytosol	20.75	23.82
EES18409	Sorghum	cytosol	20.21	22.92
EES16518	Sorghum	cytosol	18.25	22.67
OQU77885	Sorghum	cytosol	19.5	22.61
EES01920	Sorghum	cytosol	21.65	22.53
OQU77884	Sorghum	plasma membrane	18.25	22.42
KXG22822	Sorghum	mitochondrion	21.82	21.14
OQU82754	Sorghum	plastid	26.65	20.96
KXG23987	Sorghum	cytosol	19.68	20.95
EER87757	Sorghum	mitochondrion	23.26	20.41

Protein Annotations

EnsemblPlants:KXG37683	EnsemblPlantsGene:SORBI_3001G109100	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF65	PFAM:PF03514	PFscan:PS50985	ProteinID:KXG37683	ProteinID:KXG37683.1	SEG:seg
SUPFAM:SSF81995	UniParc:UPI0003C6B0D9	UniProt:A0A1B6QID4	MapMan:15.5.12	:	:

Description

hypothetical protein

Coordinates

chr1:-:8469856..8473335

Molecular Weight (calculated)

60353.8 Da

IEP (calculated)

4.672

GRAVY (calculated)

-0.072

Length

559 amino acids

Sequence
(BLAST)

001: MAYMCADSGN LMAIAQQVIQ QQQQQQQHQR HHLPPPPMPL PLPPRQAPPM PPSPAPPHGQ IPAASLPYGG GAWPQADHFF PDAFVGTSAA DAVFSDLAGA
101: ADFDSDVWMD SLIGDAPVFA DSDLERLIFT TPPPPVPAPV ATPAVAPVDA AAQPEAATPA SLPQPAAVAT PAACSSPSSL DASCSAPILQ SLLACSRTAA
201: ADPGLAAAEL VQVRAAASDD GDPAERVAFY FADALARRLA CGGGAQPTMA VDARFASDEL TLCYKTLNDA CPYSKFAHLT ANQAILEATG TATKIHIVDF
301: GIVQGIQWAA LLQALATRPG EKPSRVRISG VPSPYLGPKP ATSLAATSAR LRDFAKLLGV DFEFVPLLRP VHELDRSDFS VEPDETVAVN FMLQLYHLLG
401: DSDEPVRRVL QLVKSLDPSV VTLGEYEVSL NRAGFVDRFA NALLYYKPVF ESLDVAMPRD SPERVRVERC MFGERIRRAI GPEEGEERTD RMAASREWQT
501: LMEWCGFEPV KLSNYAMSQA DLLLWNYDSK YKYSLVELPP AFLSLAWEKR PLLTVSAWR

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.