Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012102.1-P | Field mustard | cytosol | 25.0 | 86.9 |
| CDY53846 | Canola | cytosol | 79.79 | 79.93 |
| CDY72338 | Canola | cytosol | 79.97 | 79.83 |
| AT3G50650.1 | Thale cress | cytosol | 66.44 | 71.59 |
| KRH29015 | Soybean | cytosol | 34.93 | 71.58 |
| KRH24039 | Soybean | cytosol | 53.6 | 65.07 |
| Solyc02g085340.1.1 | Tomato | cytosol | 61.64 | 59.11 |
| PGSC0003DMT400038574 | Potato | cytosol | 61.47 | 58.76 |
| VIT_04s0023g01660.t01 | Wine grape | cytosol | 59.76 | 56.93 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 52.57 | 53.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.12 | 52.52 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 47.09 | 49.91 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 46.4 | 49.54 |
| KXG37683 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 47.26 | 49.37 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 45.89 | 49.17 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 46.23 | 49.09 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 47.43 | 48.68 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 46.23 | 48.13 |
| Os03t0723000-01 | Rice | nucleus | 47.09 | 47.58 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 25.51 | 42.21 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 37.16 | 39.24 |
| AT5G41920.1 | Thale cress | cytosol | 21.23 | 30.62 |
| AT1G55580.1 | Thale cress | plastid | 21.92 | 28.76 |
| AT1G50420.1 | Thale cress | cytosol | 21.92 | 26.56 |
| AT1G66350.1 | Thale cress | cytosol | 22.43 | 25.64 |
| AT5G17490.1 | Thale cress | cytosol | 22.43 | 25.05 |
| AT1G14920.1 | Thale cress | nucleus | 22.43 | 24.58 |
| AT3G03450.1 | Thale cress | nucleus | 22.95 | 24.5 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 22.26 | 22.15 |
| AT1G63100.2 | Thale cress | plastid | 24.32 | 21.58 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 23.97 | 21.44 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:836810 | ProteinID:AED98261.1 | ArrayExpress:AT5G66770 | EnsemblPlantsGene:AT5G66770 | RefSeq:AT5G66770 |
| TAIR:AT5G66770 | RefSeq:AT5G66770-TAIR-G | EnsemblPlants:AT5G66770.1 | TAIR:AT5G66770.1 | EMBL:AY062538 | ProteinID:BAB08619.1 |
| EMBL:BT002580 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_201478.1 | PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF65 |
| UniProt:Q9FL03 | InterPro:TF_GRAS | UniParc:UPI000009DF7B | SEG:seg | : | : |
Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
Coordinates
chr5:+:26660311..26662919
Molecular Weight (calculated)
64590.5 Da
IEP (calculated)
4.437
GRAVY (calculated)
-0.406
Length
584 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.