Factsheet for Bra012102.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G66770.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G66770.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G66770.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G66770.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29015	Soybean	cytosol	66.67	39.3
CDY72338	Canola	cytosol	99.4	28.55
AT5G66770.1	Thale cress	cytosol	86.9	25.0
KRH24039	Soybean	cytosol	67.26	23.49
Bra025456.1-P	Field mustard	mitochondrion	30.95	21.14
PGSC0003DMT400038574	Potato	cytosol	63.69	17.51
GSMUA_AchrUn_...	Banana	cytosol	55.36	17.38
Zm00001d033834_P001	Maize	cytosol, plastid	56.55	17.24
Solyc02g085340.1.1	Tomato	cytosol	62.5	17.24
Bra007056.1-P	Field mustard	mitochondrion, plastid	32.14	17.09
GSMUA_Achr3P30530_001	Banana	cytosol	58.33	16.98
TraesCS4B01G054000.1	Wheat	cytosol	54.76	16.82
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	55.95	16.82
Zm00001d013385_P001	Maize	cytosol, plastid	56.55	16.7
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	54.76	16.64
GSMUA_Achr4P07320_001	Banana	cytosol	55.36	16.58
TraesCS4D01G054000.1	Wheat	cytosol	54.17	16.55
TraesCS4A01G260600.1	Wheat	cytosol	53.57	16.51
Os03t0723000-01	Rice	nucleus	55.95	16.26
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	30.95	14.73
VIT_04s0023g01660.t01	Wine grape	cytosol	50.6	13.87
Bra014251.1-P	Field mustard	cytosol	35.12	13.26
Bra018848.1-P	Field mustard	cytosol	33.93	12.95
Bra038002.1-P	Field mustard	nucleus, plastid	30.36	11.51
Bra039762.1-P	Field mustard	cytosol	31.55	10.86
Bra013973.1-P	Field mustard	cytosol	32.14	10.29
Bra026999.1-P	Field mustard	nucleus, plastid	35.12	9.78
Bra027620.1-P	Field mustard	plastid	35.12	9.34
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	26.79	8.91
Bra024875.1-P	Field mustard	nucleus	27.98	8.2
Bra017443.1-P	Field mustard	cytosol	22.02	6.76

Protein Annotations

EnsemblPlants:Bra012102.1	EnsemblPlants:Bra012102.1-P	EnsemblPlantsGene:Bra012102	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	PFAM:PF03514	PFscan:PS50985	UniParc:UPI0002541778	UniProt:M4D6J3
MapMan:15.5.12	:	:	:	:	:

Description

AT5G66770 (E=6e-080) | scarecrow transcription factor family protein

Coordinates

chrA07:-:10007811..10008317

Molecular Weight (calculated)

19127.0 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.086

Length

168 amino acids

Sequence
(BLAST)

001: MLQLYKLLDE TPAVFDTALR LARSLNPMVV TLGEYDVSLN RVGFANRVKN ALHFYSAVFE SLEPSLGRDS EERLRVERVM FGRTISGLIG PEITGNQRLR
101: MEGKEQWRVL MENAGFESVK LSNYAVSQAE ILLWNYNYSS LYSIVESKPG FVSLAWNDLP LLAVSSWR

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.