Factsheet for Bra027620.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49199	Canola	plastid	99.05	99.05
Bra026999.1-P	Field mustard	nucleus, plastid	75.32	78.94
AT1G63100.2	Thale cress	plastid	81.65	78.42
VIT_02s0025g04000.t01	Wine grape	plastid	58.07	55.95
GSMUA_Achr1P16230_001	Banana	cytosol	31.49	55.9
KRH57249	Soybean	plastid	54.11	51.51
KRH03976	Soybean	mitochondrion, nucleus	54.43	51.42
Solyc08g080400.1.1	Tomato	plastid	55.22	51.4
PGSC0003DMT400007879	Potato	plastid	55.22	51.4
GSMUA_Achr7P05850_001	Banana	mitochondrion	46.36	45.08
GSMUA_Achr1P18840_001	Banana	cytosol	41.93	43.16
Os06t0127800-01	Rice	plastid	39.87	40.84
HORVU7Hr1G010620.1	Barley	cytosol	35.92	40.32
TraesCS4A01G430600.1	Wheat	plastid	39.24	39.94
Zm00001d045507_P001	Maize	plastid	38.45	39.45
TraesCS7D01G053600.1	Wheat	plastid	38.92	39.23
TraesCS7A01G059000.1	Wheat	plastid	38.61	38.92
EER87757	Sorghum	mitochondrion	38.45	38.15
Bra025456.1-P	Field mustard	mitochondrion	14.24	36.59
Bra007056.1-P	Field mustard	mitochondrion, plastid	17.88	35.76
Bra012102.1-P	Field mustard	cytosol	9.34	35.12
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.99	32.25
Bra018848.1-P	Field mustard	cytosol	21.2	30.45
Bra014251.1-P	Field mustard	cytosol	21.04	29.89
Bra039762.1-P	Field mustard	cytosol	22.94	29.71
Bra038002.1-P	Field mustard	nucleus, plastid	20.25	28.89
Bra024875.1-P	Field mustard	nucleus	24.37	26.88
Bra013973.1-P	Field mustard	cytosol	22.15	26.67
Bra017443.1-P	Field mustard	cytosol	22.47	25.96
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	20.57	25.74

Protein Annotations

EnsemblPlants:Bra027620.1	EnsemblPlants:Bra027620.1-P	EnsemblPlantsGene:Bra027620	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI000254248D	UniProt:M4EFQ7	MapMan:15.5.12	:	:	:

Description

AT1G63100 (E=3e-256) | scarecrow transcription factor family protein

Coordinates

chrA09:+:7326018..7327916

Molecular Weight (calculated)

71115.9 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.495

Length

632 amino acids

Sequence
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKSLKRFAEE
101: NKVDKSCLSR VKRQIGGDDD HNRGFWFEHL TAQNSSQALP FSLTCSSDDY EEKVWFAPSE VISQPLQSNN PNWANSVITT ELAGLGDKDI ESSSRPAAVK
201: EASGSSTSAS SDSRHRVPEP TNGSRNQYSH RGGNTEERTI NNNHMNDSQR DFELVNLLTG CLEAIRTRNI AAINHLIART GELASPRGTT PMTRLISYYI
301: EALALRVSRM WPHIFHIAPP REFERTLEDD DAWRFLNQAT PIPKFIHYTA NEMLLRAFEG KERVHIIDFD IKQGLQWPSF FQSLASRSNP PRHVRITGVG
401: ESKHELNETG DRLRGFAEAM NLPFEFHPVV DRLEDVRLWM LHVKEGEAVA VNCVMQIHKT LYDGAAFRNF VGLVRSTNPV AVVIAEQEAE HDSAQLETRV
501: CNSLKYYSAV FDVMHTHLGA DSLMRVKIEE VLFGREIRNI VAWEGSHRQE RHVGFGQWRR MMEQLGFRSL GVSEREVLQS KMLLRMYGDG DEGFFNVERS
601: AEEGDGGGLT LGWLDQPLYT ISAWGIGGSS SF

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.