Factsheet for GSMUA_Achr7P05850_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P16230_001	Banana	cytosol	42.31	77.25
GSMUA_Achr1P18840_001	Banana	cytosol	71.54	75.73
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	76.92	58.0
VIT_02s0025g04000.t01	Wine grape	plastid	54.77	54.27
Solyc08g080400.1.1	Tomato	plastid	54.0	51.69
PGSC0003DMT400007879	Potato	plastid	53.85	51.55
Os06t0127800-01	Rice	plastid	48.15	50.73
HORVU7Hr1G010620.1	Barley	cytosol	42.77	49.38
KRH57249	Soybean	plastid	49.85	48.8
TraesCS4A01G430600.1	Wheat	plastid	46.0	48.15
KRH03976	Soybean	mitochondrion, nucleus	48.92	47.53
Zm00001d045507_P001	Maize	plastid	44.92	47.4
TraesCS7D01G053600.1	Wheat	plastid	45.69	47.37
TraesCS7A01G059000.1	Wheat	plastid	45.23	46.89
CDY49199	Canola	plastid	45.23	46.52
Bra027620.1-P	Field mustard	plastid	45.08	46.36
EER87757	Sorghum	mitochondrion	45.38	46.31
CDY47352	Canola	plastid	45.08	46.0
CDY70213	Canola	plastid	45.23	45.72
Bra026999.1-P	Field mustard	nucleus, plastid	42.15	45.44
CDY45974	Canola	plastid	44.92	45.27
AT1G63100.2	Thale cress	plastid	45.54	44.98
GSMUA_AchrUn_...	Banana	cytosol	19.23	32.72
GSMUA_Achr7P16880_001	Banana	cytosol	19.08	32.72
GSMUA_Achr1P19470_001	Banana	nucleus	19.08	32.38
GSMUA_Achr1P09360_001	Banana	cytosol	17.54	30.89
GSMUA_Achr8P09690_001	Banana	cytosol	21.08	30.72
GSMUA_Achr8P01180_001	Banana	nucleus	20.31	28.88
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	20.62	28.33
GSMUA_Achr8P18250_001	Banana	cytosol	20.0	27.14
GSMUA_Achr10P...	Banana	cytosol	19.69	26.78
GSMUA_Achr6P17870_001	Banana	cytosol	18.15	26.46
GSMUA_Achr10P...	Banana	nucleus	17.69	26.2
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.15	25.65
GSMUA_Achr6P20830_001	Banana	nucleus	23.69	25.25
GSMUA_Achr11P...	Banana	plastid	21.69	24.56
GSMUA_AchrUn_...	Banana	cytosol	20.15	24.49
GSMUA_Achr1P21300_001	Banana	nucleus	19.08	24.03
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	22.46	23.9
GSMUA_Achr3P30530_001	Banana	cytosol	21.08	23.74
GSMUA_Achr8P09400_001	Banana	cytosol	24.0	23.21
GSMUA_Achr4P07320_001	Banana	cytosol	19.69	22.82
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	23.23	21.36
GSMUA_Achr11P...	Banana	cytosol	21.38	12.61

Protein Annotations

EnsemblPlants:GSMUA_Achr7P05850_001	EnsemblPlants:GSMUA_Achr7T05850_001	EnsemblPlantsGene:GSMUA_Achr7G05850_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_28
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	SEG:seg
UniParc:UPI0002958ADD	UniProt:M0TF25	MapMan:15.5.12	:	:	:

Description

Putative Scarecrow-like protein 28 [Source:GMGC_GENE;Acc:GSMUA_Achr7G05850_001]

Coordinates

chr7:+:4328779..4330731

Molecular Weight (calculated)

71602.6 Da

IEP (calculated)

6.335

GRAVY (calculated)

-0.442

Length

650 amino acids

Sequence
(BLAST)

001: MLAGCSSTLL SPRHKLRIDA SVQLQACHFQ LQEKHCPPQQ QKMGTQRLDL PCGFASRKDP LRVALSVEKP AAEARGTSCS FRRNPVTHSS SSSMVARTSS
101: WGGTGEIDGG HGGPWERRRS SKRFHERGSC DDYRAKRTRT GGIAGLVDVE GEVWLPQSTQ EPPLVEGEKV FLVPTAASFP LPSSSSHTLV GGSSGPDNDL
201: STGENPNGKS QSDSSSSSSS AYVSSPEPTK DSSGNTASNG SRIPCSSGVA DAGGDGDGSL TEQQGLELVR LLTSCAESIS TGNYEAMNFF LARLGEMATP
301: QGTPIHRVVA YYTEALALRV ARLRPHMFSV APPRSLLDPT EDDNAIALRL LDCVSPIPKF LHFTLNERLL KALEGRDRVH IIDFNIKQGL QWPSLFQSLA
401: SRRPNPPSHV RITGVGESRQ DLQDTGIRLA RLAESFNLAF EFHAVVDRLE DVRLWMLHVK REECLAVNCV LTMHKALYDE SGKAFMDLLD LIRSTHPEIV
501: VMAEQEAKHN EPNWETRLAR SLSYYAAIFD SMDDALPKDS QARIKVEEVF AKEIRNIVAC EGDERTERHE SFDGWSKLME DGGFRCLGIG EREMLQSRMI
601: LRMYSCEKYS IEKQGEGDGL TLMWLDQPLY TVSAWAPRDV AGSSSMSQPS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.