CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49199	Canola	plastid	96.86	97.63
CDY70213	Canola	plastid	81.79	81.03
CDY45974	Canola	plastid	81.63	80.62
AT1G63100.2	Thale cress	plastid	81.95	79.33
GSMUA_Achr1P16230_001	Banana	cytosol	31.4	56.18
VIT_02s0025g04000.t01	Wine grape	plastid	57.77	56.1
KRH57249	Soybean	plastid	53.69	51.51
KRH03976	Soybean	mitochondrion, nucleus	54.0	51.42
Solyc08g080400.1.1	Tomato	plastid	54.79	51.4
PGSC0003DMT400007879	Potato	plastid	54.79	51.4
GSMUA_Achr7P05850_001	Banana	mitochondrion	46.0	45.08
GSMUA_Achr1P18840_001	Banana	cytosol	41.44	43.0
Os06t0127800-01	Rice	plastid	39.56	40.84
HORVU7Hr1G010620.1	Barley	cytosol	35.79	40.5
TraesCS4A01G430600.1	Wheat	plastid	38.93	39.94
Zm00001d045507_P001	Maize	plastid	38.15	39.45
TraesCS7D01G053600.1	Wheat	plastid	38.46	39.08
TraesCS7A01G059000.1	Wheat	plastid	38.3	38.92
EER87757	Sorghum	mitochondrion	38.15	38.15
CDY64484	Canola	mitochondrion	13.66	35.37
CDY45059	Canola	cytosol	16.01	33.55
CDY43123	Canola	cytosol, extracellular, plastid	3.14	32.79
CDY68881	Canola	cytosol	12.56	32.79
CDY50706	Canola	cytosol, extracellular, plastid	3.14	32.79
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.8	32.37
CDY50028	Canola	nucleus, plastid	19.78	30.22
CDY27670	Canola	cytosol	19.15	30.2
CDY22795	Canola	cytosol, plastid	20.88	29.95
CDY54362	Canola	plastid	19.62	29.69
CDY03601	Canola	cytosol	20.88	29.62
CDY70426	Canola	cytosol	22.76	28.6
CDY55037	Canola	cytosol	22.61	28.4
CDY36236	Canola	cytosol, nucleus, plastid	23.86	27.34
CDY38434	Canola	cytosol	21.35	26.67
CDY04092	Canola	cytosol	22.14	26.4
CDY17662	Canola	cytosol, nucleus, plastid	23.7	26.4
CDY64837	Canola	cytosol	22.14	26.01
CDY16915	Canola	cytosol, nucleus, plastid	21.04	25.52
CDY53846	Canola	cytosol	23.08	25.21
CDY72338	Canola	cytosol	22.92	24.96
CDX78219	Canola	nucleus, plastid	21.98	23.22
CDX73496	Canola	nucleus, plastid	22.29	22.83
CDY43122	Canola	nucleus	13.5	20.62
CDY50707	Canola	cytosol, nucleus, plastid	13.34	20.43
CDY37137	Canola	plastid	20.72	13.84

Protein Annotations

MapMan:15.5.12	GO:A0A078IB14	UniProt:A0A078IB14	EnsemblPlants:CDY47352	ProteinID:CDY47352	ProteinID:CDY47352.1
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00087217001	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF16	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI0004EBF446	SEG:seg	:

Description

BnaCnng14890DBnaCnng14890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB14]

Coordinates

chrLK032710:+:144970..146883

Molecular Weight (calculated)

71568.4 Da

IEP (calculated)

7.208

GRAVY (calculated)

-0.531

Length

637 amino acids

Sequence
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKKSLKRFAE
101: ENKEDKSCLS RVKRQRGGDD DHNRGFWFEH LTTQNSSQAL PFSLTCSGDD YEEKVWFAPS EVISQPLQSN NPNWANSVIT TELAGLGDKD IDSSSRPAAV
201: KEASGSSTSA SSDSRHRVPE PTNGSRNQYS HGGGNTEERT INNNHMNDSQ RDFELVNLLT GCLEAIRTRN IAAINHLIAR TGELASPRGT TPMTRLISYY
301: TEALALRVSR MWPHIFHIAP PREFERTLED DDAWRFLNQA TPIPKFIHYT ANEMLLRAFE GRERVHIIDF DIKQGLQWPS FFQSLASRSN PPRHVRITGV
401: GESKLELNET GDRLHGFAEA MNLPFEFHPV VDRLEDVRLW MLHVKEGEAV AVNCLMQMHK TLYDDGTGGA AFRNFVGLVR STNPVAVVIA EQEAEHDSAQ
501: LETRVCNSLK YYSAVFDVMH THLRADSLMR VKIEEVLFGR EIRNIVACEG SHRQGRHVGF GQWRRMMEQL GFRSLGVSER EVLQSKMLLR MYGDGDEGFF
601: NVERSAEDGD GGGVTLRWLE QPLYTISAWG IGGSSSF

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.