CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67913
CDX69452
CDX79294
CDX79888
CDX80665
CDX82568
CDX87407
CDX88507
CDX89165
CDX93945
CDX94520
CDX94573
CDX97734
CDY01615
CDY03475
CDY03913
CDY06881
CDY07541
CDY09318
CDY13070
CDY14818
CDY15713
CDY16648
CDY16687
CDY18062
CDY20191
CDY21311
CDY23552
CDY24091
CDY24237
CDY25849
CDY26402
CDY27795
CDY30147
CDY30148
CDY34266
CDY41936
CDY43390
CDY45117
CDY46345
CDY51918
CDY53504
CDY55572
CDY60212
CDY63333
CDY63822
CDY64561
CDY67200
CDY67478
CDY70667
CDY71192
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01570.1	CDY03913	AT1G27370.1	22942378
AT2G01570.1	CDY15713	AT1G27370.1	22942378
AT2G01570.1	CDY24091	AT1G53510.1	21798944
AT2G01570.1	CDY25849	AT1G53510.1	21798944
AT2G01570.1	CDY45117	AT1G53510.1	21798944
AT2G01570.1	CDY60212	AT1G53510.1	21798944
AT2G01570.1	CDX79294	AT1G79110.1	23482857
AT2G01570.1	CDX87407	AT1G79110.1	23482857
AT2G01570.1	CDX88507	AT1G79110.1	23482857
AT2G01570.1	CDX79888	AT2G42200.1	22942378
AT2G01570.1	CDY06881	AT2G42200.1	22942378
AT2G01570.1	CDY14818	AT2G42200.1	22942378
AT2G01570.1	CDY53504	AT2G42200.1	22942378
AT2G01570.1	CDY27795	AT3G05120.1	16709201
AT2G01570.1	CDY41936	AT3G05120.1	16709201
AT2G01570.1	CDY27795	AT3G05120.1	17194763
AT2G01570.1	CDY41936	AT3G05120.1	17194763
AT2G01570.1	CDY27795	AT3G05120.1	17416730
AT2G01570.1	CDY41936	AT3G05120.1	17416730
AT2G01570.1	CDY27795	AT3G05120.1	19500306
AT2G01570.1	CDY41936	AT3G05120.1	19500306
AT2G01570.1	CDX82568	AT3G12920.1	23482857
AT2G01570.1	CDY23552	AT3G12920.1	23482857
AT2G01570.1	CDY24237	AT3G12920.1	23482857
AT2G01570.1	CDY43390	AT3G12920.1	23482857
AT2G01570.1	CDY64561	AT3G12920.1	23482857
AT2G01570.1	CDX97734	AT3G16250.1	21798944
AT2G01570.1	CDY20191	AT3G16250.1	21798944
AT2G01570.1	CDY30147	AT3G16250.1	21798944
AT2G01570.1	CDY30148	AT3G16250.1	21798944
AT2G01570.1	CDY63822	AT3G16250.1	21798944
AT2G01570.1	CDX67913	AT3G63010.1	16709201
AT2G01570.1	CDX89165	AT3G63010.1	16709201
AT2G01570.1	CDX93945	AT3G63010.1	16709201
AT2G01570.1	CDY63333	AT3G63010.1	16709201
AT2G01570.1	CDY67478	AT3G63010.1	16709201
AT2G01570.1	CDY70667	AT3G63010.1	16709201
AT2G01570.1	CDX67913	AT3G63010.1	17194763
AT2G01570.1	CDX89165	AT3G63010.1	17194763
AT2G01570.1	CDX93945	AT3G63010.1	17194763
AT2G01570.1	CDY63333	AT3G63010.1	17194763
AT2G01570.1	CDY67478	AT3G63010.1	17194763
AT2G01570.1	CDY70667	AT3G63010.1	17194763
AT2G01570.1	CDX67913	AT3G63010.1	18827182
AT2G01570.1	CDX89165	AT3G63010.1	18827182
AT2G01570.1	CDX93945	AT3G63010.1	18827182
AT2G01570.1	CDY63333	AT3G63010.1	18827182
AT2G01570.1	CDY67478	AT3G63010.1	18827182
AT2G01570.1	CDY70667	AT3G63010.1	18827182
AT2G01570.1	CDX67913	AT3G63010.1	19429606
AT2G01570.1	CDX89165	AT3G63010.1	19429606
AT2G01570.1	CDX93945	AT3G63010.1	19429606
AT2G01570.1	CDY63333	AT3G63010.1	19429606
AT2G01570.1	CDY67478	AT3G63010.1	19429606
AT2G01570.1	CDY70667	AT3G63010.1	19429606
AT2G01570.1	CDX67913	AT3G63010.1	19500306
AT2G01570.1	CDX89165	AT3G63010.1	19500306
AT2G01570.1	CDX93945	AT3G63010.1	19500306
AT2G01570.1	CDY63333	AT3G63010.1	19500306
AT2G01570.1	CDY67478	AT3G63010.1	19500306
AT2G01570.1	CDY70667	AT3G63010.1	19500306
AT2G01570.1	CDX94573	AT4G04770.1	21798944
AT2G01570.1	CDY16648	AT4G04770.1	21798944
AT2G01570.1	CDX94520	AT4G19700.1	23482857
AT2G01570.1	CDY01615	AT4G19700.1	23482857
AT2G01570.1	CDY07541	AT4G19700.1	23482857
AT2G01570.1	CDY09318	AT4G19700.1	23482857
AT2G01570.1	CDY21311	AT4G19700.1	23482857
AT2G01570.1	CDY51918	AT4G19700.1	23482857
AT2G01570.1	CDY71607	AT4G19700.1	23482857
AT2G01570.1	CDY03475	AT4G24210.1	15155881
AT2G01570.1	CDY34266	AT4G24210.1	15155881
AT2G01570.1	CDY03475	AT4G24210.1	15161962
AT2G01570.1	CDY34266	AT4G24210.1	15161962
AT2G01570.1	CDX69452	AT5G16320.1	21798944
AT2G01570.1	CDY55572	AT5G16320.1	21798944
AT2G01570.1	CDY67200	AT5G16320.1	21798944
AT2G01570.1	CDX80665	AT5G27320.1	16709201
AT2G01570.1	CDY16687	AT5G27320.1	16709201
AT2G01570.1	CDX80665	AT5G27320.1	17194763
AT2G01570.1	CDY16687	AT5G27320.1	17194763
AT2G01570.1	CDX80665	AT5G27320.1	19500306
AT2G01570.1	CDY16687	AT5G27320.1	19500306
AT2G01570.1	CDY13070	AT5G45100.1	23482857
AT2G01570.1	CDY18062	AT5G45100.1	23482857
AT2G01570.1	CDY26402	AT5G45100.1	23482857
AT2G01570.1	CDY46345	AT5G45100.1	23482857
AT2G01570.1	CDY71192	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024875.1-P	Field mustard	nucleus	96.94	94.07
CDY17662	Canola	cytosol, nucleus, plastid	96.76	94.06
AT2G01570.1	Thale cress	mitochondrion, nucleus	88.13	83.48
CDY64837	Canola	cytosol	80.94	83.03
CDY04092	Canola	cytosol	78.6	81.84
CDY50706	Canola	cytosol, extracellular, plastid	7.91	72.13
CDY43123	Canola	cytosol, extracellular, plastid	7.91	72.13
KRH58636	Soybean	nucleus	66.55	70.75
KRH42544	Soybean	cytosol, nucleus, plastid	65.65	70.6
VIT_01s0011g05260.t01	Wine grape	cytosol	68.7	64.75
CDY55037	Canola	cytosol	56.65	62.13
CDY70426	Canola	cytosol	56.47	61.93
CDY38434	Canola	cytosol	54.32	59.22
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	34.35	58.59
CDY16915	Canola	cytosol, nucleus, plastid	55.22	58.48
GSMUA_Achr8P18250_001	Banana	cytosol	49.28	57.2
GSMUA_Achr10P...	Banana	cytosol	47.84	55.65
EER93592	Sorghum	cytosol	59.89	53.11
Zm00001d033680_P001	Maize	nucleus	60.07	53.02
HORVU4Hr1G006930.1	Barley	nucleus	58.81	52.91
TraesCS4D01G040400.1	Wheat	cytosol	59.17	52.81
Os03t0707600-01	Rice	nucleus	59.35	52.8
TraesCS4A01G271000.1	Wheat	cytosol	58.81	52.74
TraesCS4B01G043100.1	Wheat	cytosol	58.63	52.5
Zm00001d013465_P001	Maize	cytosol	58.99	52.48
GSMUA_Achr1P21300_001	Banana	nucleus	46.94	50.58
CDY43122	Canola	nucleus	37.05	49.4
CDY50707	Canola	cytosol, nucleus, plastid	36.69	49.04
CDY64484	Canola	mitochondrion	16.01	36.18
CDY45059	Canola	cytosol	19.6	35.86
CDY68881	Canola	cytosol	14.21	32.38
CDY03601	Canola	cytosol	25.9	32.07
CDY27670	Canola	cytosol	22.84	31.44
CDY22795	Canola	cytosol, plastid	25.0	31.31
CDY50028	Canola	nucleus, plastid	22.48	29.98
CDY54362	Canola	plastid	22.12	29.22
CDY49199	Canola	plastid	27.88	24.53
CDX78219	Canola	nucleus, plastid	26.44	24.38
CDX73496	Canola	nucleus, plastid	26.8	23.95
CDY47352	Canola	plastid	27.34	23.86
CDY70213	Canola	plastid	27.16	23.48
CDY45974	Canola	plastid	26.98	23.26
CDY72338	Canola	cytosol	22.48	21.37
CDY53846	Canola	cytosol	22.3	21.27
CDY37137	Canola	plastid	25.18	14.68

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	GO:A0A078HEN8	UniProt:A0A078HEN8
EnsemblPlants:CDY36236	ProteinID:CDY36236	ProteinID:CDY36236.1	ncoils:Coil	InterPro:DELLA_N_sf	GO:GO:0000989
GO:GO:0003674	GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00060177001	InterPro:IPR005202	InterPro:IPR038088	PFAM:PF03514	PFAM:PF12041
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N
InterPro:TF_GRAS	UniParc:UPI0004EE14B4	SEG:seg	:	:	:

Description

BnaC07g20900DBnaC07g20900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEN8]

Coordinates

chrLK032371:-:62764..64992

Molecular Weight (calculated)

60614.0 Da

IEP (calculated)

5.666

GRAVY (calculated)

-0.172

Length

556 amino acids

Sequence
(BLAST)

001: MKRDLHQFQG PNHGTSIAGS STSSPAVFGK DKMMMVKEEE DDELLGVLGY KVRSSEMAEV ALKLEQLETM MGNVQEDGLA HLATDTVHYN PAELYSWLDN
101: MLTELNPPAA SGSSGDYDLK AIPGSAICRG SNQFAVDSLN NKRLKPCSSP DSMVTSPSPA GVIGTTVTTT TASESTRPLI LVDSQDNGVR LVHALMACAE
201: AVQSSNLTLA EALVKQIGFL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ TQIDHSLSDT LQMHFYETCP YLKFAHFTAN QAILEAFEGK KRVHVIDFSM
301: NQGLQWPALM QALALREGGP PSFRLTGIGP PAADNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL DASMLELRPS ETESVAVNSV FELHKLLGRP
401: GGIEKVFGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGAPSSQDKV MSEVYLGKQI CNLVACEGPD RVERHETLSQ WSNRFGSSGF
501: APAHLGSNAF KQASTLLALF NGGEGYRVEE NNGCLMLSWH TRPLITTSAW KLSAVH

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.