CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69854
CDX96983

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04770.1	CDX69854	AT5G10210.1	21798944
AT4G04770.1	CDX96983	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16648	Canola	plastid	93.28	92.69
Bra029516.1-P	Field mustard	plastid	93.7	80.8
AT5G44316.1	Thale cress	plastid	76.05	77.02
AT4G04770.1	Thale cress	plastid	89.08	76.12
GSMUA_Achr1P17690_001	Banana	mitochondrion	53.36	75.82
TraesCS3D01G343800.1	Wheat	plastid	63.66	59.06
GSMUA_Achr3P14230_001	Banana	cytosol	31.09	58.04
CDX91226	Canola	cytosol	28.15	58.01
Os01t0830000-01	Rice	plasma membrane, plastid	65.76	57.54
TraesCS3A01G349800.1	Wheat	plastid	64.5	56.43
EES03828	Sorghum	plastid	64.08	56.27
TraesCS3B01G382400.1	Wheat	plastid	64.08	56.27
CDX97313	Canola	vacuole	11.34	48.21
HORVU3Hr1G087860.1	Barley	plastid	63.87	46.55
Zm00001d012465_P001	Maize	plastid	27.94	44.19
Zm00001d042998_P001	Maize	plastid	19.12	38.56
CDY32277	Canola	plastid	17.65	17.5
CDY26899	Canola	plastid	17.23	17.34

Protein Annotations

EnsemblPlants:CDX94573	EnsemblPlantsGene:GSBRNA2T00157851001	GO:A0A078E588	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf
PANTHER:PTHR30508	PANTHER:PTHR30508:SF1	PFAM:PF01458	ProteinID:CDX94573	ProteinID:CDX94573.1	SEG:seg
SUPFAM:SSF101960	TIGRFAMs:TIGR01980	UniParc:UPI0004EE25A4	MapMan:35.1	:	:

Description

BnaC09g22630D

Coordinates

chrLK031882:-:1294346..1296340

Molecular Weight (calculated)

52813.1 Da

IEP (calculated)

4.962

GRAVY (calculated)

-0.363

Length

476 amino acids

Sequence
(BLAST)

001: MASLLANGIS SFSPQPTPDS SKSPKSFHPK PDSFKFPSSS KTLIPTTRLL KVRADVGTIE SNPAGNSSST EKLQQYFQNL DYDKKYGFVE DIDSFTIPKG
101: LSEETIGSIS TLKDEPAWML DFRFKAYAKF LTLKEPQWSD NRYPPIDFNN MCYYSAPKKK PTLNSLDEAD PQLLDYFDKL GVPLTEQKRL ANVAVDAVLD
201: SVSIATTHRK TLEKSGVIFC SISEAIREYP DLIKKYLGRV VPSDDNYYAA LNSAVFSDGS FCYIPKNTRC PMPISTYFRI NAMETGQFER TLIVAEEGSF
301: VEYLEGCTAP SYDTNQLHAA VVELYCGAGA EIKYSTRGLC AGDRSKISWT QVETGSAITW KYPSVVLEGD DSVGEFYSNA KNTSVCDSML IGDKAAANTY
401: PYIQVKNPSA KVEHEASTSK IGEDQLFYFQ QRGIDHERAL AAMISGFCRD VFNKLPDEFG AEVNQLMSIK LEGSVG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.