Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10210.1 | CDX89520 | AT2G22810.1 | 21798944 |
| AT5G10210.1 | CDY25639 | AT2G22810.1 | 21798944 |
| AT5G10210.1 | CDY06945 | AT2G41120.1 | 21798944 |
| AT5G10210.1 | CDY57582 | AT2G41120.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69854 | Canola | cytosol, nucleus, plastid | 93.26 | 93.26 |
| Bra009050.1-P | Field mustard | cytosol | 59.07 | 89.76 |
| AT5G10210.1 | Thale cress | cytosol | 77.72 | 76.14 |
| CDY14531 | Canola | cytosol | 62.18 | 60.3 |
| KRG97587 | Soybean | nucleus | 36.79 | 36.04 |
| KRH31287 | Soybean | cytosol | 35.23 | 34.0 |
| PGSC0003DMT400004772 | Potato | cytosol | 35.23 | 33.17 |
| PGSC0003DMT400056116 | Potato | cytosol | 32.64 | 32.31 |
| Solyc04g055130.1.1 | Tomato | nucleus | 21.24 | 32.03 |
| PGSC0003DMT400004770 | Potato | cytosol | 21.76 | 31.58 |
| Solyc03g078620.1.1 | Tomato | cytosol | 32.64 | 31.19 |
| PGSC0003DMT400004773 | Potato | cytosol | 19.17 | 30.08 |
| Solyc04g055140.1.1 | Tomato | cytosol | 20.73 | 29.63 |
| Solyc04g055150.1.1 | Tomato | nucleus | 20.21 | 28.89 |
| PGSC0003DMT400004769 | Potato | cytosol | 11.4 | 27.5 |
Protein Annotations
| EnsemblPlants:CDX96983 | EnsemblPlantsGene:GSBRNA2T00103931001 | Gene3D:2.60.40.150 | InterPro:C2_domain_sf | InterPro:IPR035892 | PANTHER:PTHR35503 |
| PANTHER:PTHR35503:SF2 | ProteinID:CDX96983 | ProteinID:CDX96983.1 | UniParc:UPI0004EAE615 | MapMan:35.2 | : |
Description
BnaC09g46420D
Coordinates
chrLK031897:+:52829..53410
Molecular Weight (calculated)
21837.4 Da
IEP (calculated)
5.479
GRAVY (calculated)
-0.294
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVVRNLCSL KFEVKIVEAR NVELKSSPSS LFIRFYLHAG SNRKVELNTT EICSRPDNDV TIWNQSFGLE CQGDETAIEE LKQESVLFEL RRRKTTSFMG
101: KWSRSELVGR GEVSWKSVME SDGMEIERFV VMGEKKDGED CNKPLMLKIG LKLQASKLVN TKRVEDLCGC KDCKTCDCLD YEAFVVACAL DGI
101: KWSRSELVGR GEVSWKSVME SDGMEIERFV VMGEKKDGED CNKPLMLKIG LKLQASKLVN TKRVEDLCGC KDCKTCDCLD YEAFVVACAL DGI
001: MGIVENIRSL KFEVKIVEAR NVELKSSPTT LFVRFYLHAG NNSKIELNTP EIRSRSDCEV ISWNQSFGLE CQGNETAVEE LKQQSVVFEL RRRKTTPFLK
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
Arabidopsis Description
At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.