CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69854
CDX96983

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41120.1	CDX69854	AT5G10210.1	21798944
AT2G41120.1	CDX96983	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06945	Canola	plastid	93.75	91.95
Bra016952.1-P	Field mustard	plastid	92.19	90.77
AT2G41120.1	Thale cress	plastid	78.12	76.63
KRH66631	Soybean	cytosol	22.27	51.82
VIT_08s0040g00160.t01	Wine grape	plastid	46.48	47.6
KRG94998	Soybean	plastid	45.7	47.18
PGSC0003DMT400050859	Potato	plastid	46.09	46.27
Solyc03g044630.1.1	Tomato	plastid	45.7	46.25
TraesCS4D01G124600.1	Wheat	plastid	41.02	41.34
TraesCSU01G261400.1	Wheat	plastid	40.62	41.11
TraesCS4B01G128100.1	Wheat	plastid	40.62	41.11
Os11t0130200-01	Rice	plastid	42.58	39.64
HORVU4Hr1G026810.1	Barley	plastid	40.62	39.39
KXG27654	Sorghum	plastid	42.97	37.93
HORVU4Hr1G026800.1	Barley	cytosol	39.45	37.13
Zm00001d052409_P001	Maize	plastid	43.36	33.53
KRH66630	Soybean	plastid	18.75	30.57

Protein Annotations

EnsemblPlants:CDY57582	EnsemblPlantsGene:GSBRNA2T00022390001	Gene3D:1.20.58.500	InterPro:DUF309	InterPro:TTHA0068_sf	PANTHER:PTHR34796
PFAM:PF03745	ProteinID:CDY57582	ProteinID:CDY57582.1	SEG:seg	SUPFAM:SSF140663	UniParc:UPI0004EDD998
UniProt:A0A078J2F1	MapMan:35.2	:	:	:	:

Description

BnaC04g56850DBnaC04g56850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2F1]

Coordinates

chrLK033586:-:42411..43581

Molecular Weight (calculated)

28695.7 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.244

Length

256 amino acids

Sequence
(BLAST)

001: MAASPTHIQL PSSCTLLPPY SFISSLPSSP LSITTASTIL TSTRLCPLRV SFSRRSIVRY NDNFEEGDNE ENWNFEEAVS LFNKRDYYKS HDALEALWIR
101: AEEPARTLFH GILQCAVGFH HLFNNNHKGA MMELGEGVCK LRKIDFEDGP FQEFERDVSA VLEFVYQTQL ELAACSEDMC LTMDQSDRSY QLLGGYAAGE
201: SIYTLETLVD FNNGMSEASV ILFSPSSSSS EPTRVKLPTL EATNKHLLPF TGDESF

Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)

001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F

Arabidopsis Description

At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.