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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • peroxisome 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:peroxisome
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g078620.1.1
Solyc04g055130.1.1
Solyc04g055140.1.1
Solyc04g055150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41120.1 Solyc03g078620.1.1 AT5G10210.1 21798944
AT2G41120.1 Solyc04g055130.1.1 AT5G10210.1 21798944
AT2G41120.1 Solyc04g055140.1.1 AT5G10210.1 21798944
AT2G41120.1 Solyc04g055150.1.1 AT5G10210.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400050859 Potato plastid 87.35 86.67
KRH66631 Soybean cytosol 21.74 50.0
AT2G41120.1 Thale cress plastid 49.01 47.51
Bra016952.1-P Field mustard plastid 47.83 46.54
CDY06945 Canola plastid 47.83 46.36
VIT_08s0040g00160.t01 Wine grape plastid 45.45 46.0
CDY57582 Canola plastid 46.25 45.7
KRG94998 Soybean plastid 44.66 45.56
TraesCS4B01G128100.1 Wheat plastid 39.92 39.92
TraesCSU01G261400.1 Wheat plastid 39.92 39.92
TraesCS4D01G124600.1 Wheat plastid 39.92 39.76
HORVU4Hr1G026810.1 Barley plastid 39.92 38.26
Os11t0130200-01 Rice plastid 41.5 38.18
HORVU4Hr1G026800.1 Barley cytosol 39.92 37.13
KXG27654 Sorghum plastid 42.29 36.9
Zm00001d052409_P001 Maize plastid 42.69 32.63
KRH66630 Soybean plastid 18.97 30.57
Protein Annotations
EnsemblPlants:Solyc03g044630.1.1EnsemblPlantsGene:Solyc03g044630.1Gene3D:1.10.3450.10InterPro:DUF309InterPro:TTHA0068_sfPANTHER:PTHR34796
PFAM:PF03745SUPFAM:SSF140663UniParc:UPI0002768358UniProt:K4BG82MapMan:35.2:
Description
No Description!
Coordinates
chr3:-:10249065..10250489
Molecular Weight (calculated)
29630.9 Da
IEP (calculated)
6.342
GRAVY (calculated)
-0.477
Length
253 amino acids
Sequence
(BLAST)
001: MANNISINLP KFNQTLISFT NISSLSNFPY SKIHLHSQLY HRQFKVTNYT SPSSYTYRLF SRRSFMEDED DHKSKNYSFQ EAVRLFNSRD YYRCHDVVEA
101: LWTESQEPIR SLLHGILQCA VGFHHLFNKN HKGAMMELGE GVCKLRKFNF ENGPFYEFEK EISQVLDFIY ATQIEVAACG DDICVTMDQS ERSYQLLGGF
201: AAGQQLYTLV TEQHDYCYIV FSYPKYDENV QQLRIKLPTI NASEQNLKEL EYS
Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)
001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
Arabidopsis Description
At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.