Factsheet for PGSC0003DMT400050859

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004769
PGSC0003DMT400004770
PGSC0003DMT400004772
PGSC0003DMT400004773
PGSC0003DMT400056116

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41120.1	PGSC0003DMT400004769	AT5G10210.1	21798944
AT2G41120.1	PGSC0003DMT400004770	AT5G10210.1	21798944
AT2G41120.1	PGSC0003DMT400004772	AT5G10210.1	21798944
AT2G41120.1	PGSC0003DMT400004773	AT5G10210.1	21798944
AT2G41120.1	PGSC0003DMT400056116	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044630.1.1	Tomato	plastid	86.67	87.35
KRH66631	Soybean	cytosol	21.96	50.91
KRG94998	Soybean	plastid	47.06	48.39
AT2G41120.1	Thale cress	plastid	49.41	48.28
VIT_08s0040g00160.t01	Wine grape	plastid	46.67	47.6
Bra016952.1-P	Field mustard	plastid	47.84	46.92
CDY06945	Canola	plastid	47.45	46.36
CDY57582	Canola	plastid	46.27	46.09
TraesCS4B01G128100.1	Wheat	plastid	40.78	41.11
TraesCSU01G261400.1	Wheat	plastid	40.78	41.11
TraesCS4D01G124600.1	Wheat	plastid	40.39	40.55
Os11t0130200-01	Rice	plastid	41.57	38.55
HORVU4Hr1G026810.1	Barley	plastid	39.61	38.26
KXG27654	Sorghum	plastid	41.57	36.55
HORVU4Hr1G026800.1	Barley	cytosol	38.43	36.03
KRH66630	Soybean	plastid	20.0	32.48
Zm00001d052409_P001	Maize	plastid	41.96	32.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400050859	EnsemblPlantsGene:PGSC0003DMG400019757	EntrezGene:102583359	Gene3D:1.10.3450.10	InterPro:DUF309	InterPro:TTHA0068_sf
ncoils:Coil	PANTHER:PTHR34796	PFAM:PF03745	PGSC:PGSC0003DMG400019757	RefSeq:XP_006362385.1	SEG:seg
SUPFAM:SSF140663	UniParc:UPI000294C628	UniProt:M1BR00	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019757]

Coordinates

chr3:-:9241570..9243296

Molecular Weight (calculated)

29836.8 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.529

Length

255 amino acids

Sequence
(BLAST)

001: MANNISISLP KFNQTLISFT NISSLSNFPY SKVHFHNQLY YHQFKETNYT SPSSYSYRLF SRRSFVEDED DHKSKNYNFQ EAVALFNSRD YYRCHDVLEA
101: LWNESQEPIR TLLHGILQCA VGFHHLFNKN HKGAMMELGE GLCKLRKFNF ENGPFYEFEK EISQVLDFIY RTQIEVAACG DDICVTMDQS ERSYQLLGGF
201: AAGQQLYSLV SDSYQDDYCY LVFSSGKYQE NVEQLRIKLP TIDASEENLK ELEYN

Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)

001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F

Arabidopsis Description

At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.