CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69854
CDX96983

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41120.1	CDX69854	AT5G10210.1	21798944
AT2G41120.1	CDX96983	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016952.1-P	Field mustard	plastid	95.4	95.77
CDY57582	Canola	plastid	91.95	93.75
AT2G41120.1	Thale cress	plastid	80.84	80.84
KRH66631	Soybean	cytosol	22.61	53.64
KRG94998	Soybean	plastid	45.98	48.39
VIT_08s0040g00160.t01	Wine grape	plastid	45.98	48.0
Solyc03g044630.1.1	Tomato	plastid	46.36	47.83
PGSC0003DMT400050859	Potato	plastid	46.36	47.45
TraesCS4D01G124600.1	Wheat	plastid	41.38	42.52
TraesCSU01G261400.1	Wheat	plastid	41.0	42.29
TraesCS4B01G128100.1	Wheat	plastid	41.0	42.29
Os11t0130200-01	Rice	plastid	44.44	42.18
HORVU4Hr1G026810.1	Barley	plastid	41.38	40.91
KXG27654	Sorghum	plastid	43.68	39.31
HORVU4Hr1G026800.1	Barley	cytosol	39.85	38.24
Zm00001d052409_P001	Maize	plastid	42.91	33.84
KRH66630	Soybean	plastid	18.77	31.21

Protein Annotations

EnsemblPlants:CDY06945	EnsemblPlantsGene:GSBRNA2T00123249001	Gene3D:1.10.3450.10	InterPro:DUF309	InterPro:TTHA0068_sf	ncoils:Coil
PANTHER:PTHR34796	PFAM:PF03745	ProteinID:CDY06945	ProteinID:CDY06945.1	SEG:seg	SUPFAM:SSF140663
UniParc:UPI0004EF201F	MapMan:35.2	:	:	:	:

Description

BnaA04g23700D

Coordinates

chrLK031974:+:335498..336744

Molecular Weight (calculated)

29257.1 Da

IEP (calculated)

4.378

GRAVY (calculated)

-0.314

Length

261 amino acids

Sequence
(BLAST)

001: MAASPTHIHL PSSCTLLPSS SFISSLPSSP LSITTASTIL TSTRLSSLRV SFSRRSIVRY NDNFEEDEEE DEKEEEDWSF EEAVSLFNKR DYYKSHDALE
101: ALWIRAEEPA RTLFHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFQEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYTL ETVVDFNNGM SETSVILFSP SSSSSEPTRV KLPTLEATNK HLLAFTGDES L

Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)

001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F

Arabidopsis Description

At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.