CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97587
KRH31287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41120.1	KRG97587	AT5G10210.1	21798944
AT2G41120.1	KRH31287	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94998	Soybean	plastid	54.14	34.27
VIT_08s0040g00160.t01	Wine grape	plastid	32.48	20.4
TraesCSU01G261400.1	Wheat	plastid	32.48	20.16
PGSC0003DMT400050859	Potato	plastid	32.48	20.0
TraesCS4B01G128100.1	Wheat	plastid	31.85	19.76
TraesCS4D01G124600.1	Wheat	plastid	31.85	19.68
AT2G41120.1	Thale cress	plastid	32.48	19.54
Os11t0130200-01	Rice	plastid	33.76	19.27
Solyc03g044630.1.1	Tomato	plastid	30.57	18.97
HORVU4Hr1G026810.1	Barley	plastid	31.85	18.94
CDY06945	Canola	plastid	31.21	18.77
CDY57582	Canola	plastid	30.57	18.75
Bra016952.1-P	Field mustard	plastid	30.57	18.46
HORVU4Hr1G026800.1	Barley	cytosol	29.3	16.91
KXG27654	Sorghum	plastid	29.94	16.21
Zm00001d052409_P001	Maize	plastid	28.66	13.6
KRH66631	Soybean	cytosol	2.55	3.64

Protein Annotations

EMBL:ACUP02001998	EnsemblPlants:KRH66630	EnsemblPlantsGene:GLYMA_03G119000	Gene3D:1.20.58.500	InterPro:DUF309	InterPro:TTHA0068_sf
PANTHER:PTHR34796	PFAM:PF03745	ProteinID:KRH66630	ProteinID:KRH66630.1	SEG:seg	SUPFAM:SSF140663
UniParc:UPI000295184E	UniProt:K7KEI8	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:32977521..32977994

Molecular Weight (calculated)

18201.2 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.438

Length

157 amino acids

Sequence
(BLAST)

001: MHSSSSSMAL LPPSSLGTLF HISSQHYLLN NSFHNPITLT PSSFNPPTHN YSKQHRDHRS FNSKLLAISY RYFIEEEDDD DDNKGENQNF DEAVALFNGG
101: EYYKCHDYLE ALWLNAEEPT RTLIHGILQC ALDFHHLFNQ VFIHLGLITI LFHRDYC

Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)

001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F

Arabidopsis Description

At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.