Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G128100.1 | Wheat | plastid | 95.28 | 95.65 |
| TraesCSU01G261400.1 | Wheat | plastid | 94.88 | 95.26 |
| HORVU4Hr1G026810.1 | Barley | plastid | 94.09 | 90.53 |
| HORVU4Hr1G026800.1 | Barley | cytosol | 81.5 | 76.1 |
| Os11t0130200-01 | Rice | plastid | 60.63 | 56.0 |
| KXG27654 | Sorghum | plastid | 62.99 | 55.17 |
| Zm00001d052409_P001 | Maize | plastid | 64.96 | 49.85 |
| KRG94998 | Soybean | plastid | 43.7 | 44.76 |
| KRH66631 | Soybean | cytosol | 18.9 | 43.64 |
| VIT_08s0040g00160.t01 | Wine grape | plastid | 42.91 | 43.6 |
| CDY06945 | Canola | plastid | 42.52 | 41.38 |
| CDY57582 | Canola | plastid | 41.34 | 41.02 |
| AT2G41120.1 | Thale cress | plastid | 41.73 | 40.61 |
| PGSC0003DMT400050859 | Potato | plastid | 40.55 | 40.39 |
| Bra016952.1-P | Field mustard | plastid | 41.34 | 40.38 |
| Solyc03g044630.1.1 | Tomato | plastid | 39.76 | 39.92 |
| KRH66630 | Soybean | plastid | 19.68 | 31.85 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G124600.1 | EnsemblPlantsGene:TraesCS4D01G124600 | Gene3D:1.10.3450.10 | InterPro:DUF309 | InterPro:TTHA0068_sf | PANTHER:PTHR34796 |
| PFAM:PF03745 | SEG:seg | SUPFAM:SSF140663 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4D:-:108906397..108907246
Molecular Weight (calculated)
28109.0 Da
IEP (calculated)
5.945
GRAVY (calculated)
-0.363
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVLAPLSRA HVGSPAAAAA SARPYVLHRF NWRTIRRRGA GLRCRRRLLS ARGERPAPDD DEDDEELAGF DAAVALFNGG EYHACHDVVE ELWYSAEDPA
101: RTLLHGVLQC AVGFHHLFNQ NHRGAMMELG EGLCKLRRLR LEDDDDDQGP FSRFRDEVAA VLSFLYRTQK ELAACNDELC LAMDGSATSY QLLGDFAAGQ
201: RLYRQGVDAD GVPSILFSGR ASGDYLAPPC TVKLPSLHAT EQHLTALQRA HEYS
101: RTLLHGVLQC AVGFHHLFNQ NHRGAMMELG EGLCKLRRLR LEDDDDDQGP FSRFRDEVAA VLSFLYRTQK ELAACNDELC LAMDGSATSY QLLGDFAAGQ
201: RLYRQGVDAD GVPSILFSGR ASGDYLAPPC TVKLPSLHAT EQHLTALQRA HEYS
001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
Arabidopsis Description
At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.