Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra009050.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G41120.1 | Bra009050.1-P | AT5G10210.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY06945 | Canola | plastid | 95.77 | 95.4 |
CDY57582 | Canola | plastid | 90.77 | 92.19 |
AT2G41120.1 | Thale cress | plastid | 79.62 | 79.31 |
KRH66631 | Soybean | cytosol | 22.31 | 52.73 |
VIT_08s0040g00160.t01 | Wine grape | plastid | 47.31 | 49.2 |
KRG94998 | Soybean | plastid | 45.77 | 47.98 |
PGSC0003DMT400050859 | Potato | plastid | 46.92 | 47.84 |
Solyc03g044630.1.1 | Tomato | plastid | 46.54 | 47.83 |
TraesCS4D01G124600.1 | Wheat | plastid | 40.38 | 41.34 |
TraesCSU01G261400.1 | Wheat | plastid | 40.0 | 41.11 |
TraesCS4B01G128100.1 | Wheat | plastid | 40.0 | 41.11 |
Os11t0130200-01 | Rice | plastid | 43.46 | 41.09 |
HORVU4Hr1G026810.1 | Barley | plastid | 40.38 | 39.77 |
KXG27654 | Sorghum | plastid | 43.85 | 39.31 |
HORVU4Hr1G026800.1 | Barley | cytosol | 39.23 | 37.5 |
Zm00001d052409_P001 | Maize | plastid | 42.69 | 33.53 |
KRH66630 | Soybean | plastid | 18.46 | 30.57 |
Protein Annotations
EnsemblPlants:Bra016952.1 | EnsemblPlants:Bra016952.1-P | EnsemblPlantsGene:Bra016952 | Gene3D:1.10.3450.10 | InterPro:DUF309 | InterPro:TTHA0068_sf |
PANTHER:PTHR34796 | PFAM:PF03745 | SEG:seg | SUPFAM:SSF140663 | UniParc:UPI00025452EF | UniProt:M4DKC3 |
MapMan:35.2 | : | : | : | : | : |
Description
AT2G41120 (E=4e-087) | unknown protein
Coordinates
chrA04:-:17418886..17419983
Molecular Weight (calculated)
29182.2 Da
IEP (calculated)
4.361
GRAVY (calculated)
-0.287
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASPTHIQL PSSCTLLPSS SFISSLPLPP LSITTASAIL TSTRLSSLRV RFSRRSIVRY NDNFEEDEEE DENEEDWSFE EAVSLFNKRD YYKSHDALEA
101: LWIRAEEPAR TLFHGILQCA VGFHHLFNNN HKGAMMELGE GVCKLRKMNF EDGPFQEFER DVSAVLEFVY QTQLELAGCS EDMCLTMDQS DRSYQLLGGY
201: AAGESIYTLE TVVDFNNGMS ETCVILFSPS SSSSEPTRVK LPTLEATNKH LLAFTGDESL
101: LWIRAEEPAR TLFHGILQCA VGFHHLFNNN HKGAMMELGE GVCKLRKMNF EDGPFQEFER DVSAVLEFVY QTQLELAGCS EDMCLTMDQS DRSYQLLGGY
201: AAGESIYTLE TVVDFNNGMS ETCVILFSPS SSSSEPTRVK LPTLEATNKH LLAFTGDESL
001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
Arabidopsis Description
At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.