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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • nucleus 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra009050.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G41120.1 Bra009050.1-P AT5G10210.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06945 Canola plastid 95.77 95.4
CDY57582 Canola plastid 90.77 92.19
AT2G41120.1 Thale cress plastid 79.62 79.31
KRH66631 Soybean cytosol 22.31 52.73
VIT_08s0040g00160.t01 Wine grape plastid 47.31 49.2
KRG94998 Soybean plastid 45.77 47.98
PGSC0003DMT400050859 Potato plastid 46.92 47.84
Solyc03g044630.1.1 Tomato plastid 46.54 47.83
TraesCS4D01G124600.1 Wheat plastid 40.38 41.34
TraesCSU01G261400.1 Wheat plastid 40.0 41.11
TraesCS4B01G128100.1 Wheat plastid 40.0 41.11
Os11t0130200-01 Rice plastid 43.46 41.09
HORVU4Hr1G026810.1 Barley plastid 40.38 39.77
KXG27654 Sorghum plastid 43.85 39.31
HORVU4Hr1G026800.1 Barley cytosol 39.23 37.5
Zm00001d052409_P001 Maize plastid 42.69 33.53
KRH66630 Soybean plastid 18.46 30.57
Protein Annotations
EnsemblPlants:Bra016952.1EnsemblPlants:Bra016952.1-PEnsemblPlantsGene:Bra016952Gene3D:1.10.3450.10InterPro:DUF309InterPro:TTHA0068_sf
PANTHER:PTHR34796PFAM:PF03745SEG:segSUPFAM:SSF140663UniParc:UPI00025452EFUniProt:M4DKC3
MapMan:35.2:::::
Description
AT2G41120 (E=4e-087) | unknown protein
Coordinates
chrA04:-:17418886..17419983
Molecular Weight (calculated)
29182.2 Da
IEP (calculated)
4.361
GRAVY (calculated)
-0.287
Length
260 amino acids
Sequence
(BLAST)
001: MAASPTHIQL PSSCTLLPSS SFISSLPLPP LSITTASAIL TSTRLSSLRV RFSRRSIVRY NDNFEEDEEE DENEEDWSFE EAVSLFNKRD YYKSHDALEA
101: LWIRAEEPAR TLFHGILQCA VGFHHLFNNN HKGAMMELGE GVCKLRKMNF EDGPFQEFER DVSAVLEFVY QTQLELAGCS EDMCLTMDQS DRSYQLLGGY
201: AAGESIYTLE TVVDFNNGMS ETCVILFSPS SSSSEPTRVK LPTLEATNKH LLAFTGDESL
Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)
001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
Arabidopsis Description
At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.