Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41120.1 | KRG97587 | AT5G10210.1 | 21798944 |
| AT2G41120.1 | KRH31287 | AT5G10210.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94998 | Soybean | plastid | 93.64 | 41.53 |
| VIT_08s0040g00160.t01 | Wine grape | plastid | 58.18 | 25.6 |
| CDY06945 | Canola | plastid | 53.64 | 22.61 |
| Bra016952.1-P | Field mustard | plastid | 52.73 | 22.31 |
| CDY57582 | Canola | plastid | 51.82 | 22.27 |
| AT2G41120.1 | Thale cress | plastid | 52.73 | 22.22 |
| PGSC0003DMT400050859 | Potato | plastid | 50.91 | 21.96 |
| Solyc03g044630.1.1 | Tomato | plastid | 50.0 | 21.74 |
| TraesCSU01G261400.1 | Wheat | plastid | 44.55 | 19.37 |
| TraesCS4B01G128100.1 | Wheat | plastid | 44.55 | 19.37 |
| KXG27654 | Sorghum | plastid | 50.0 | 18.97 |
| TraesCS4D01G124600.1 | Wheat | plastid | 43.64 | 18.9 |
| Os11t0130200-01 | Rice | plastid | 45.45 | 18.18 |
| HORVU4Hr1G026810.1 | Barley | plastid | 42.73 | 17.8 |
| HORVU4Hr1G026800.1 | Barley | cytosol | 42.73 | 17.28 |
| Zm00001d052409_P001 | Maize | plastid | 51.82 | 17.22 |
| KRH66630 | Soybean | plastid | 3.64 | 2.55 |
Protein Annotations
| EMBL:ACUP02001998 | EnsemblPlants:KRH66631 | EnsemblPlantsGene:GLYMA_03G119100 | InterPro:DUF309 | PANTHER:PTHR34796 | ProteinID:KRH66631 |
| ProteinID:KRH66631.1 | UniParc:UPI0006ED6F34 | UniProt:A0A0R0KHU1 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr3:+:32995556..32996401
Molecular Weight (calculated)
12208.6 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.264
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQLGEGLCK LRKMEFSNGP FQKFEKDISA IDLAACSDDM CVAMDPTERS YQLLREYASG QRVYDLELCS DASVYIVFCP QGSNNGGATK APRVKLPTLK
101: ATTEHLVAYE
101: ATTEHLVAYE
001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F
Arabidopsis Description
At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.