Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97587 | Soybean | nucleus | 84.5 | 85.79 |
| Bra009050.1-P | Field mustard | cytosol | 25.5 | 40.16 |
| PGSC0003DMT400004772 | Potato | cytosol | 40.5 | 39.51 |
| CDX69854 | Canola | cytosol, nucleus, plastid | 34.5 | 35.75 |
| PGSC0003DMT400004770 | Potato | cytosol | 23.5 | 35.34 |
| CDX96983 | Canola | cytosol | 34.0 | 35.23 |
| PGSC0003DMT400004769 | Potato | cytosol | 14.0 | 35.0 |
| PGSC0003DMT400004773 | Potato | cytosol | 21.5 | 34.96 |
| PGSC0003DMT400056116 | Potato | cytosol | 34.0 | 34.87 |
| AT5G10210.1 | Thale cress | cytosol | 33.5 | 34.01 |
| Solyc04g055140.1.1 | Tomato | cytosol | 22.5 | 33.33 |
| Solyc04g055130.1.1 | Tomato | nucleus | 21.0 | 32.81 |
| Solyc03g078620.1.1 | Tomato | cytosol | 33.0 | 32.67 |
| Solyc04g055150.1.1 | Tomato | nucleus | 21.5 | 31.85 |
| AT5G65030.1 | Thale cress | mitochondrion, nucleus | 32.0 | 31.68 |
| CDY14531 | Canola | cytosol | 31.5 | 31.66 |
| Bra024347.1-P | Field mustard | cytosol | 31.0 | 31.16 |
Protein Annotations
| EMBL:ACUP02007137 | EnsemblPlants:KRH31287 | EnsemblPlantsGene:GLYMA_11G239900 | EntrezGene:100791093 | Gene3D:2.60.40.150 | InterPro:C2_dom |
| InterPro:C2_domain_sf | InterPro:IPR000008 | InterPro:IPR035892 | PANTHER:PTHR35503 | PANTHER:PTHR35503:SF2 | PFAM:PF00168 |
| ProteinID:KRH31287 | ProteinID:KRH31287.1 | SEG:seg | SMART:SM00239 | SUPFAM:SSF49562 | UniParc:UPI000233C3DB |
| UniProt:I1LNL1 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:33442260..33443278
Molecular Weight (calculated)
23160.7 Da
IEP (calculated)
8.002
GRAVY (calculated)
-0.580
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHSHKLPSF SCELRIIQAQ NVESIKTTKN LFTRLYLPAG NNKRIQLNTK KVSSNTQCVP FWNESFNLDC SCPQEFLESL KKESLVLELR QNKIFRSHLV
101: GKGEIPWKAI LESPKMEFKE WVKMDLVSGI SDCEDIMFKA PQVQVEIKIQ VEKENNNNNR RKRLNNKWDE CGCKHGHGQH AWCSADDYDI YALGAVLEAF
101: GKGEIPWKAI LESPKMEFKE WVKMDLVSGI SDCEDIMFKA PQVQVEIKIQ VEKENNNNNR RKRLNNKWDE CGCKHGHGQH AWCSADDYDI YALGAVLEAF
001: MGIVENIRSL KFEVKIVEAR NVELKSSPTT LFVRFYLHAG NNSKIELNTP EIRSRSDCEV ISWNQSFGLE CQGNETAVEE LKQQSVVFEL RRRKTTPFLK
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
101: KWSKSELVGR GKIFWKSVIE TDGMEIERFV VMDETKDHVL EDCDKHKPLL LKIALKVQAS KIVNTKRVED LCECKDCRTC NCVDYEAFVV ACALAGI
Arabidopsis Description
At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.