Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14531 | Canola | cytosol | 76.24 | 77.39 |
| Bra024347.1-P | Field mustard | cytosol | 75.25 | 76.38 |
| AT5G10210.1 | Thale cress | cytosol | 59.9 | 61.42 |
| PGSC0003DMT400056116 | Potato | cytosol | 36.14 | 37.44 |
| PGSC0003DMT400004772 | Potato | cytosol | 36.14 | 35.61 |
| KRG97587 | Soybean | nucleus | 33.66 | 34.52 |
| PGSC0003DMT400004773 | Potato | cytosol | 20.79 | 34.15 |
| Solyc04g055130.1.1 | Tomato | nucleus | 20.79 | 32.81 |
| PGSC0003DMT400004769 | Potato | cytosol | 12.87 | 32.5 |
| PGSC0003DMT400004770 | Potato | cytosol | 21.29 | 32.33 |
| KRH31287 | Soybean | cytosol | 31.68 | 32.0 |
| Solyc03g078620.1.1 | Tomato | cytosol | 31.68 | 31.68 |
| Solyc04g055140.1.1 | Tomato | cytosol | 20.3 | 30.37 |
| Solyc04g055150.1.1 | Tomato | nucleus | 20.3 | 30.37 |
Protein Annotations
| ArrayExpress:AT5G65030 | EMBL:BT029499 | EnsemblPlants:AT5G65030.1 | EnsemblPlantsGene:AT5G65030 | EntrezGene:836627 | Gene3D:2.60.40.150 |
| GO:GO:0008150 | InterPro:C2_domain_sf | InterPro:IPR035892 | PANTHER:PTHR35503 | PANTHER:PTHR35503:SF2 | ProteinID:AED97988.1 |
| ProteinID:BAA97315.1 | RefSeq:AT5G65030 | RefSeq:AT5G65030-TAIR-G | RefSeq:NP_201308.1 | TAIR:AT5G65030 | TAIR:AT5G65030.1 |
| Unigene:At.66744 | UniParc:UPI00000A65CC | UniProt:Q9LV76 | MapMan:35.2 | : | : |
Description
At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76]
Coordinates
chr5:-:25975697..25976356
Molecular Weight (calculated)
23100.2 Da
IEP (calculated)
8.077
GRAVY (calculated)
-0.266
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVMEKKLRS LKCQVRIVEA RNVEIKSQAS TLFVRFYLSA GHNRKIEVNT RELSSKSDQL MWDQSFGLEC QGDEAAVKEL KQQRVVFELR RKKISTFLRK
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.