Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g063540.1.1 | |
| Solyc02g091990.2.1 | |
| Solyc03g043890.2.1 | |
| Solyc03g044630.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g055150.1.1 | Tomato | nucleus | 96.3 | 96.3 |
| PGSC0003DMT400004769 | Potato | cytosol | 53.33 | 90.0 |
| Solyc04g055130.1.1 | Tomato | nucleus | 81.48 | 85.94 |
| Solyc03g078620.1.1 | Tomato | cytosol | 48.15 | 32.18 |
| KRG97587 | Soybean | nucleus | 34.07 | 23.35 |
| KRH31287 | Soybean | cytosol | 33.33 | 22.5 |
| CDX69854 | Canola | cytosol, nucleus, plastid | 30.37 | 21.24 |
| CDX96983 | Canola | cytosol | 29.63 | 20.73 |
| Bra024347.1-P | Field mustard | cytosol | 30.37 | 20.6 |
| CDY14531 | Canola | cytosol | 30.37 | 20.6 |
| AT5G65030.1 | Thale cress | mitochondrion, nucleus | 30.37 | 20.3 |
| AT5G10210.1 | Thale cress | cytosol | 28.15 | 19.29 |
| Bra009050.1-P | Field mustard | cytosol | 13.33 | 14.17 |
Protein Annotations
| EnsemblPlants:Solyc04g055140.1.1 | EnsemblPlantsGene:Solyc04g055140.1 | PANTHER:PTHR35503 | PANTHER:PTHR35503:SF2 | UniParc:UPI0002765C4D | UniProt:K4BSR1 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:53768780..53769187
Molecular Weight (calculated)
15502.9 Da
IEP (calculated)
8.634
GRAVY (calculated)
-0.313
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTQDSINMM KQGTIIFELR SRRYVPLLRK NIGGSQLLGK VEIPWRRVFE STRMEIEEWA IFMTTSKNIN EDVKPPAVKI GMKVKVNETI NKINKLRRSS
101: WDESCNCKGY CECNSSIFSL DDYDIFALGV ALDSL
101: WDESCNCKGY CECNSSIFSL DDYDIFALGV ALDSL
001: MGVMEKKLRS LKCQVRIVEA RNVEIKSQAS TLFVRFYLSA GHNRKIEVNT RELSSKSDQL MWDQSFGLEC QGDEAAVKEL KQQRVVFELR RKKISTFLRK
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
Arabidopsis Description
At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.