Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004773 | Potato | cytosol | 87.5 | 56.91 |
| PGSC0003DMT400004770 | Potato | cytosol | 90.0 | 54.14 |
| Solyc04g055140.1.1 | Tomato | cytosol | 90.0 | 53.33 |
| Solyc04g055150.1.1 | Tomato | nucleus | 87.5 | 51.85 |
| PGSC0003DMT400004772 | Potato | cytosol | 86.25 | 33.66 |
| PGSC0003DMT400056116 | Potato | cytosol | 50.0 | 20.51 |
| KRG97587 | Soybean | nucleus | 35.0 | 14.21 |
| KRH31287 | Soybean | cytosol | 35.0 | 14.0 |
| AT5G65030.1 | Thale cress | mitochondrion, nucleus | 32.5 | 12.87 |
| AT5G10210.1 | Thale cress | cytosol | 30.0 | 12.18 |
| CDY14531 | Canola | cytosol | 30.0 | 12.06 |
| Bra024347.1-P | Field mustard | cytosol | 28.75 | 11.56 |
| CDX69854 | Canola | cytosol, nucleus, plastid | 27.5 | 11.4 |
| CDX96983 | Canola | cytosol | 27.5 | 11.4 |
| Bra009050.1-P | Field mustard | cytosol | 1.25 | 0.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004769 | EnsemblPlantsGene:PGSC0003DMG400001889 | PANTHER:PTHR35503 | PANTHER:PTHR35503:SF2 | PGSC:PGSC0003DMG400001889 | UniParc:UPI000296438D |
| UniProt:M0ZNX7 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001889]
Coordinates
chr4:-:50931160..50931935
Molecular Weight (calculated)
8969.8 Da
IEP (calculated)
4.725
GRAVY (calculated)
-0.128
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MEIEEWAIFM ATSKNINEDV KPPAVKIAMK VKVNETTKIN KLRRSWDESC ACKGYCGCNS SIFSVDDYDI FSLGVALDSL
001: MGVMEKKLRS LKCQVRIVEA RNVEIKSQAS TLFVRFYLSA GHNRKIEVNT RELSSKSDQL MWDQSFGLEC QGDEAAVKEL KQQRVVFELR RKKISTFLRK
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
Arabidopsis Description
At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.