Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g078620.1.1 | Tomato | cytosol | 83.59 | 80.69 |
| PGSC0003DMT400004772 | Potato | cytosol | 57.95 | 55.12 |
| PGSC0003DMT400004770 | Potato | cytosol | 35.38 | 51.88 |
| PGSC0003DMT400004769 | Potato | cytosol | 20.51 | 50.0 |
| PGSC0003DMT400004773 | Potato | cytosol | 30.77 | 48.78 |
| Bra009050.1-P | Field mustard | cytosol | 25.13 | 38.58 |
| Bra024347.1-P | Field mustard | cytosol | 37.44 | 36.68 |
| KRG97587 | Soybean | nucleus | 36.92 | 36.55 |
| AT5G65030.1 | Thale cress | mitochondrion, nucleus | 37.44 | 36.14 |
| CDY14531 | Canola | cytosol | 35.9 | 35.18 |
| CDX69854 | Canola | cytosol, nucleus, plastid | 34.36 | 34.72 |
| AT5G10210.1 | Thale cress | cytosol | 34.87 | 34.52 |
| KRH31287 | Soybean | cytosol | 34.87 | 34.0 |
| CDX96983 | Canola | cytosol | 32.31 | 32.64 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400056116 | EnsemblPlantsGene:PGSC0003DMG400021798 | Gene3D:2.60.40.150 | InterPro:C2_domain_sf | InterPro:IPR035892 | PANTHER:PTHR35503 |
| PANTHER:PTHR35503:SF2 | PGSC:PGSC0003DMG400021798 | UniParc:UPI0002964B4A | UniProt:M1BYZ2 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021798]
Coordinates
chr3:-:32848143..32849120
Molecular Weight (calculated)
21808.3 Da
IEP (calculated)
8.034
GRAVY (calculated)
-0.173
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MENYSSLSCE IQIIRARNVL LGGNLFVRCY LSSGEDQRVQ INSQEITSKS ADHLFWDESF SLDCSGTQDS INRLKKGSVV FELHSRKNTI LPILSGSKML
101: GRAEIPWRSV FESKNMEIVE WAIMDKENVK PMAVQIAMKV KSIKETIKVK KNIDSKLRRS SSSCACMDYC GCNSSNVFSV DDYEVFALGA ALGAL
101: GRAEIPWRSV FESKNMEIVE WAIMDKENVK PMAVQIAMKV KSIKETIKVK KNIDSKLRRS SSSCACMDYC GCNSSNVFSV DDYEVFALGA ALGAL
001: MGVMEKKLRS LKCQVRIVEA RNVEIKSQAS TLFVRFYLSA GHNRKIEVNT RELSSKSDQL MWDQSFGLEC QGDEAAVKEL KQQRVVFELR RKKISTFLRK
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
101: SSKSEVVGRG EVSWESVFES PGMEIERLVV MGESKNWVLE DERPLLLKIA LKVQALEEME KMLIKNDKKT EKLCCVCSSR DCGSCSCLDY EAFALVCALD
201: CI
Arabidopsis Description
At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.