CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97587
KRH31287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41120.1	KRG97587	AT5G10210.1	21798944
AT2G41120.1	KRH31287	AT5G10210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66631	Soybean	cytosol	41.53	93.64
KRH66630	Soybean	plastid	34.27	54.14
VIT_08s0040g00160.t01	Wine grape	plastid	52.82	52.4
PGSC0003DMT400050859	Potato	plastid	48.39	47.06
CDY06945	Canola	plastid	48.39	45.98
Bra016952.1-P	Field mustard	plastid	47.98	45.77
CDY57582	Canola	plastid	47.18	45.7
AT2G41120.1	Thale cress	plastid	47.98	45.59
Solyc03g044630.1.1	Tomato	plastid	45.56	44.66
TraesCS4B01G128100.1	Wheat	plastid	45.16	44.27
TraesCSU01G261400.1	Wheat	plastid	45.16	44.27
TraesCS4D01G124600.1	Wheat	plastid	44.76	43.7
Os11t0130200-01	Rice	plastid	45.97	41.45
HORVU4Hr1G026810.1	Barley	plastid	42.74	40.15
KXG27654	Sorghum	plastid	46.37	39.66
HORVU4Hr1G026800.1	Barley	cytosol	41.94	38.24
Zm00001d052409_P001	Maize	plastid	45.56	34.14

Protein Annotations

EMBL:ACUP02012068	EnsemblPlants:KRG94998	EnsemblPlantsGene:GLYMA_19G123400	Gene3D:1.10.3450.10	InterPro:DUF309	InterPro:TTHA0068_sf
PANTHER:PTHR34796	PFAM:PF03745	ProteinID:KRG94998	ProteinID:KRG94998.1	SEG:seg	SUPFAM:SSF140663
UniParc:UPI000233E47A	UniProt:I1N8K6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:38145571..38147679

Molecular Weight (calculated)

28124.1 Da

IEP (calculated)

5.310

GRAVY (calculated)

-0.348

Length

248 amino acids

Sequence
(BLAST)

001: MAFLPSSLRT LFHISSQRSL PNSFHNSITL ASSFNPLTHS KQHLNHRGCN SKLLAISYRY FIEEEEEDDE NNNFDEAVAL FNGGEYYKCH DYLEALWLNA
101: EEPTRTLIHG ILQCAVGFHH LFNQNHRGAM MQLGEGLCKL RKMEFSNGPF QKFEKDISAV LDFIYQTQIE LAACSEDMCV AMDRSERSYQ LLGEYASGQR
201: VYDLELCSDA SVYIVFCPQG SNNGGATEAP RVKLPTLKAT TEHLVAYE

Best Arabidopsis Sequence Match ( AT2G41120.1 )
(BLAST)

001: MAVSSKHFQV PSSFTLPPSS FFSSLIPSSP ISVTASTIRA STKFSSIRVR FSRRSIVRYN DHAGEDEEDS DEDKEEYWSF EEAVTLFNKR DYYKSHDALE
101: ALWIQAEEPT RTLIHGILQC AVGFHHLFNN NHKGAMMELG EGVCKLRKMN FEDGPFHEFE RDVSAVLEFV YQTQLELAAC SEDMCLTMDQ SDRSYQLLGG
201: YAAGESIYSL ETVLDFNNGM SETTSILFSP LHSSSEPTRV KLPTLTATDK HLLASTYDDR F

Arabidopsis Description

At2g41120 [Source:UniProtKB/TrEMBL;Acc:O80675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.