Factsheet for TraesCS3B01G382400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G349800.1	Wheat	plastid	99.26	98.9
TraesCS3D01G343800.1	Wheat	plastid	87.64	92.59
EES03828	Sorghum	plastid	92.44	92.44
Os01t0830000-01	Rice	plasma membrane, plastid	86.9	86.58
GSMUA_Achr3P14230_001	Banana	cytosol	38.93	82.75
GSMUA_Achr1P17690_001	Banana	mitochondrion	50.18	81.19
Zm00001d012465_P001	Maize	plastid	41.88	75.42
HORVU3Hr1G087860.1	Barley	plastid	90.22	74.89
Zm00001d042998_P001	Maize	plastid	32.1	73.73
CDX91226	Canola	cytosol	31.37	73.59
KRH03586	Soybean	plastid	66.97	68.49
Bra029516.1-P	Field mustard	plastid	69.0	67.75
KRH20223	Soybean	plastid	67.71	67.46
PGSC0003DMT400042503	Potato	plastid	67.53	67.03
Solyc03g031700.2.1	Tomato	plastid	67.34	66.61
Solyc02g080440.2.1	Tomato	plastid	66.97	66.48
PGSC0003DMT400013035	Potato	plastid	67.16	66.42
AT4G04770.1	Thale cress	plastid	67.9	66.07
CDY16648	Canola	plastid	56.83	64.3
KRH13114	Soybean	cytosol, plastid	9.96	64.29
CDX94573	Canola	plastid	56.27	64.08
VIT_10s0116g01910.t01	Wine grape	cytosol, mitochondrion	9.96	62.79
VIT_10s0116g01920.t01	Wine grape	plastid	58.86	62.67
AT5G44316.1	Thale cress	plastid	51.66	59.57
CDX97313	Canola	vacuole	8.3	40.18
TraesCS3B01G035600.1	Wheat	plastid	15.68	17.86

Protein Annotations

EnsemblPlants:TraesCS3B01G382400.1	EnsemblPlantsGene:TraesCS3B01G382400	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016226	InterPro:SUF_FeS_clus_asmbl_SufB	InterPro:SUF_FeS_clus_asmbl_SufBD	InterPro:SUF_FeS_clus_asmbl_SufBD_sf	PANTHER:PTHR30508
PANTHER:PTHR30508:SF1	PFAM:PF01458	SEG:seg	SUPFAM:SSF101960	TIGRFAMs:TIGR01980	MapMan:7.11.1.1.1.1

Description

No Description!

Coordinates

chr3B:-:602356235..602360029

Molecular Weight (calculated)

59284.0 Da

IEP (calculated)

6.286

GRAVY (calculated)

-0.325

Length

542 amino acids

Sequence
(BLAST)

001: MAASASTSLF GPCALTARLG AGRPSGGPRR RVDARGRGRL SVVAVQTGPQ KPSPPPSPSS PAADEAEALQ NLLKREYKYG FVSDFESFSI PKGLSEATVR
101: RISELKAEPA WMLDFRLAAY RRFLTMAEPT WSDNVYSPVD LQSLCFYSAP KTKPKLNSLD EVDPELLKTF DRLGIPLGEQ KRLSNVAVDA VIDSTSIATT
201: HREALMAKGV IFCSISEAIR EYPDLIKRYI GSIVPPGDNY YAALNSAVFS DGSFCYVPKD TVCPMEISTY FRINDKETGQ FERTLIVADE RSTVSYLEGC
301: TAPAYDSNQL HAAVVELVCE EGAEIKYSTV QNWYAGDEEG KGGIYNFVTK RGRCKGRGSK ISWTQVETGS AITWKYPSVE LVGDDTVGEF YSVALTKDYQ
401: QADTGTKMIH KGKNSRSRII SKGISAGKSR NCYRGLVQMN SGAENAYNSS QCDSLLIGDN AAANTYPTIQ VGCTSGRVEH EASTSKIGED QLFYFQQRGI
501: DHEKAVAAMI GGFCRAVFEH LPYEFAQEVD ALMNLKLEGS VG

Best Arabidopsis Sequence Match ( AT4G04770.1 )
(BLAST)

001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG

Arabidopsis Description

ABCI8UPF0051 protein ABCI8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZS97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.